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1 parent 0632e0f commit 4b600f1Copy full SHA for 4b600f1
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workflow/rules/cutadapt.single.smk
@@ -102,7 +102,7 @@ if config['sequencing_direction'] == "fwd_1":
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shell:
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"""
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TMPD=$(mktemp -d -t --tmpdir={TMPDIR} 'XXXXXX')
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- FWD_RC=`echo {config[primers][fwd][sequence]} | tr '[ATUGCYRSWKMBDHNatugcyrswkbdhvn]' '[TACGRYSWMKVHDBNtaacgryswmkvhdbn]' |rev`
+ FWD_RC=`echo {config[primers][fwd][sequence]} | tr '[ATUGCYRSWKMBDHNatugcyrswkbdhvn]' '[TAACGRYSWMKVHDBNtaacgryswmkvhdbn]' |rev`
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RVS_RC=`echo {config[primers][rvs][sequence]} | tr '[ATUGCYRSWKMBDHNatugcyrswkbdhvn]' '[TAACGRYSWMKVHDBNtaacgryswmkvhdbn]' |rev`
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cutadapt -g {config[primers][fwd][sequence]} \
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{config[primer_cutting][indels]} -n {config[primer_cutting][count]} -O {config[primer_cutting][overlap]} \
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