.gitignore

.ctt

# CTT writes scenario outputs to <root>/<scenario_key>/ directly (it ignores
# the output_dir setting in ctt.toml). The tests/snapshot-baselines.sh and
# tests/check-baselines.sh scripts clean them up automatically, but if a run
# is interrupted these patterns prevent accidental commits.
/full-academic/
/analysis-only/
/manuscript-only/
/package-dev/
/custom-*/
/bioinformatics/
/minimal-starter/
/quick-manuscript/
/progressive-*/
/docs-*/
/vcs-*/
/tracking-*/
/infra-*/
/writeup-*/
/data-*/
/package-dev-*/
/ci-*/
/analysis-*/
/absolutely-minimal/
/maximum-everything/
/migration-*/
/debug-test/
# Snapshot script's saved log
/tmp-ctt-snapshot.log

template/.clerk
template/.cpcache
template/analysis/_build
template/analysis/renv
_output

# General
.DS_Store


# Thumbnails
._*

# Files that might appear in the root of a volume
.DocumentRevisions-V100
.fseventsd
.Spotlight-V100
.TemporaryItems
.Trashes
.VolumeIcon.icns
.com.apple.timemachine.donotpresent

# Directories potentially created on remote AFP share
.AppleDB
.AppleDesktop
Network Trash Folder
Temporary Items
.apdisk

*~

# temporary files which can be created if a process still has a handle open of a deleted file
.fuse_hidden*

# KDE directory preferences
.directory

# Linux trash folder which might appear on any partition or disk
.Trash-*

# .nfs files are created when an open file is removed but is still being accessed
.nfs*

# CLOJURE
.clerk



# OCaml
template/analysis/_build/


# Bazel
bazel-bin
bazel-out
bazel-template
bazel-testlogs

MODULE.bazel.lock

template/.idea
template/template.iml


# DOCUMENTATION BUILDS
template/analysis/pbin
template/writeup/presentation/_extensions/
template/writeup/manuscript/pollen/compiled

docs/presentations/academic-template/output/src/template-presentation_files
docs/presentations/academic-template/output/template-presentation_files
template-presentation_files
/docs/presentations/output/src/template-presentation.html