fix: Make genome assembly optional. Use builtin chromsizes by default… #90

	name: Run Pytest

	on:
	push:
	branches: [ "main" ]
	pull_request:
	branches: [ "main" ]

	jobs:
	build:
	name: Run regression tests
	permissions:
	contents: read
	pull-requests: write
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.10", "3.11", "3.12", "3.13"]

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install pytest pytest-mock pytest-cov ruff
	pip install .
	- name: Lint with ruff
	run: \|
	ruff check --exit-non-zero-on-fix jointly_hic
	- name: Test with pytest
	run: \|
	pytest --cov=jointly_hic --cov-report=html --cov-report=term-missing --cov-fail-under=80 --color=yes --verbose tests

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