fix: Make genome assembly optional. Use builtin chromsizes by default… #11

	name: Build and Push to GHCR

	on:
	push:
	branches: [ "main" ]


	permissions:
	contents: read
	packages: write # Required for GHCR

	jobs:
	build-and-push:
	runs-on: ubuntu-latest

	steps:
	- name: Check Out Code
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: '3.12'

	- name: Install package and get version
	run: \|
	pip install .
	echo "PACKAGE_VERSION=$(python -c 'from jointly_hic import __version__; print(__version__)')" >> $GITHUB_ENV

	- name: Log in to GitHub Container Registry (GHCR)
	uses: docker/login-action@v3
	with:
	registry: ghcr.io
	username: ${{ github.actor }}
	password: ${{ secrets.GITHUB_TOKEN }}

	- name: Build and Push Docker Image to GHCR
	uses: docker/build-push-action@v5
	with:
	context: .
	file: Dockerfile
	push: true
	tags: \|
	ghcr.io/${{ github.repository_owner }}/jointly-hic:latest
	ghcr.io/${{ github.repository_owner }}/jointly-hic:${{ env.PACKAGE_VERSION }}

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