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Hello,
I am trying to run busco within Quast, but I have error with Augustus. I made an installation with mamba of Quast 5.2.0.
The error message in the log of Augustus:
/soft/2019013/Conda_env/quast/lib/python3.10/site-packages/quast_libs/augustus3.2.3/bin/augustus: ERROR
PP::Profile: Error parsing pattern file"/soft/2019013/Conda_env/quast/lib/python3.10/site-packages/quast_libs/busco/bacteria/prfl/POG091H001O.prfl", line 8.
I have also installed a more recent version of Augustus (3.5.0) in the same conda environment. But how do you ask to quast to use this version rather than:
/soft/2019013/Conda_env/quast/lib/python3.10/site-packages/quast_libs/augustus3.2.3/bin/augustus
Is it with a new soft link to:
/soft/2019013/Conda_env/quast/bin/augustus
I am not sure that the new version of Augustus will fix the issue?
Thanks for the help
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