Rename LORIS electrophysiology chunker #1448
MaximeBICMTLpython-checks.yml
on: pull_request
Matrix: Global type checks
Matrix: Strict type checks
Matrix: Unit tests
Matrix: Lints
Annotations
6 errors and 28 warnings
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Pyright reportReturnType:
python/loris_bids_reader/src/loris_bids_reader/reader.py#L273
Type "list[BidsMriDataTypeReader | BidsDataTypeReader]" is not assignable to return type "Sequence[BidsDataTypeReader]"
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Pyright reportArgumentType:
python/loris_bids_reader/src/loris_bids_reader/reader.py#L241
Argument of type "Self@BidsSessionReader" cannot be assigned to parameter "session" of type "BidsSessionReader" in function "__init__"
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Pyright reportMissingImports:
python/scripts/ingest_eeg_bids_datasets.py#L13
Import "scripts.delete_physiological_file" could not be resolved
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Pyright reportMissingImports:
python/scripts/ingest_eeg_bids_datasets.py#L13
Import "scripts.delete_physiological_file" could not be resolved
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Pyright reportReturnType:
python/loris_bids_reader/src/loris_bids_reader/reader.py#L273
Type "list[BidsMriDataTypeReader | BidsDataTypeReader]" is not assignable to return type "Sequence[BidsDataTypeReader]"
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Pyright reportArgumentType:
python/loris_bids_reader/src/loris_bids_reader/reader.py#L241
Argument of type "Self@BidsSessionReader" cannot be assigned to parameter "session" of type "BidsSessionReader" in function "__init__"
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Lints (3.11)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, actions/setup-python@v5. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Unit tests (3.11)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, actions/setup-python@v5. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Lints (3.12)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, actions/setup-python@v5. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Unit tests (3.12)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, actions/setup-python@v5. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Strict type checks (3.11)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, actions/setup-python@v5. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Global type checks (3.11)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, actions/setup-python@v5. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Pyright reportDeprecated:
python/lib/dicom_archive.py#L81
The method "get_tarchive_series_from_series_uid_and_echo_time" in class "TarchiveSeries" is deprecated
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Pyright reportDeprecated:
python/lib/dicom_archive.py#L68
The method "create_tarchive_dict" in class "Tarchive" is deprecated
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Pyright reportDeprecated:
python/lib/dicom_archive.py#L57
The method "create_tarchive_dict" in class "Tarchive" is deprecated
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Pyright reportDeprecated:
python/lib/dicom_archive.py#L44
The class "TarchiveSeries" is deprecated
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Pyright reportDeprecated:
python/lib/dicom_archive.py#L43
The class "Tarchive" is deprecated
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Pyright reportDeprecated:
python/lib/dicom_archive.py#L7
The class "TarchiveSeries" is deprecated
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Pyright reportDeprecated:
python/lib/dicom_archive.py#L6
The class "Tarchive" is deprecated
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Pyright reportDeprecated:
python/lib/dcm2bids_imaging_pipeline_lib/push_imaging_files_to_s3_pipeline.py#L259
The method "update_files" in class "Files" is deprecated
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Pyright reportDeprecated:
python/lib/dcm2bids_imaging_pipeline_lib/dicom_archive_loader_pipeline.py#L406
The method "update_files" in class "Files" is deprecated
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Pyright reportDeprecated:
python/lib/database_lib/mri_scanner.py#L81
The method "register_new_scanner" in class "MriScanner" is deprecated
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Global type checks (3.12)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, actions/setup-python@v5. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Pyright reportDeprecated:
python/lib/dicom_archive.py#L81
The method "get_tarchive_series_from_series_uid_and_echo_time" in class "TarchiveSeries" is deprecated
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Pyright reportDeprecated:
python/lib/dicom_archive.py#L68
The method "create_tarchive_dict" in class "Tarchive" is deprecated
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Pyright reportDeprecated:
python/lib/dicom_archive.py#L57
The method "create_tarchive_dict" in class "Tarchive" is deprecated
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Pyright reportDeprecated:
python/lib/dicom_archive.py#L44
The class "TarchiveSeries" is deprecated
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Pyright reportDeprecated:
python/lib/dicom_archive.py#L43
The class "Tarchive" is deprecated
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Pyright reportDeprecated:
python/lib/dicom_archive.py#L7
The class "TarchiveSeries" is deprecated
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Pyright reportDeprecated:
python/lib/dicom_archive.py#L6
The class "Tarchive" is deprecated
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Pyright reportDeprecated:
python/lib/dcm2bids_imaging_pipeline_lib/push_imaging_files_to_s3_pipeline.py#L259
The method "update_files" in class "Files" is deprecated
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Pyright reportDeprecated:
python/lib/dcm2bids_imaging_pipeline_lib/dicom_archive_loader_pipeline.py#L406
The method "update_files" in class "Files" is deprecated
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Pyright reportDeprecated:
python/lib/database_lib/mri_scanner.py#L81
The method "register_new_scanner" in class "MriScanner" is deprecated
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Strict type checks (3.12)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, actions/setup-python@v5. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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