| date | 2016-06-20 09:22:23 -0700 |
|---|---|
| tags | analysis, python, wholeBrain, data visualization |
| author | James B. Ackman |
This is a python/opencv analysis repo to test:
- read capability of hdf5 matlab d2r.mat files with h5py and hemispheric symmetry calculations using numpy/opencv
- read capability of tiff movies and make dF/F (F-F0/F0) normalization and display using numpy/opencv
The python notebooks have contain some subfunctions and routines that are potentially instructive. The images saved in assets are a number of snapshot frame of bi-hemispheric activity patterns that were saved by pressing s while playing movies in 2016-06-15-opencv-RGBmasks-xcorr.ipynb
See also anaconda python installation and opencv setup instructions
For companion functions based on some of the scripts implemented in these notebooks see hemisphereXcorr.py and playtiffmovie.py at pyWholeBrain.