added nucleicAcidType

Author: ameliakallaher

modules/biospecimen/nucleicAcidType.csv

@@ -0,0 +1,5 @@
+Attribute,Description,Valid Values,DependsOn,Properties,Required,Parent,DependsOn Component,Source,Validation Rules,columnType,module
+nucleicAcidType,The nucleic acid type of the biospecimen which includes DNA (deoxyribonucleic acid) and RNA (ribonucleic acid),"RNA, DNA, Not applicable",,,False,ManifestColumn,,sage.annotations-ngs.nucleicAcidType-0.0.3,,string,biospecimen
+RNA,ribonucleic acid,,,,,nucleicAcidType,,Sage Bionetworks,,string,biospecimen
+DNA,Deoxyribonucleic acid,,,,,nucleicAcidType,,Sage Bionetworks,,string,biospecimen
+Not applicable,,,,,,nucleicAcidType,,Sage Bionetworks,,string,biospecimen

modules/template/templates.csv

@@ -20,7 +20,7 @@ assay_wholeExomeSeq_metadata_template,SysBio wholeExomeSeq metadata template sch
 assay_wholeGenomeSeq_metadata_template,SysBio wholeGenomeSeq (aka WGS) metadata template schema,,"Component, specimenID, libraryID, assay, platform, referenceSet, dnaBatch, sequencingBatch, libraryPrep, libraryPreparationMethod, readLength, runType, totalReads, numberCells, ratio260over280, ratio260over230, GQN",,False,ManifestTemplate,,sysbio.metadataTemplates-assay.wholeGenomeSeq,,,template
 biospecimen_drosophila_metadata_template,SysBio drosophila biospecimen metadata template schema,,"Component, specimenID, bodyPart, tissueWeight, nucleicAcidSource, genotype, ageDays, nIndividuals, nMale, nFemale, temperature",,False,ManifestTemplate,,sysbio.metadataTemplates-biospecimen.drosophila,,,template
 biospecimen_invitro_metadata_template,SysBio in vitro biospecimen metadata template schema,,"Component, individualID, specimenID, specimenIdSource, modelSystemType, sourceCell, cellType, reprogrammingMethod, differentiationMethod, passage, terminalDifferentiationPoint, samplingAge, samplingAgeUnits, treatmentType, nucleicAcidSource, assay",,False,ManifestTemplate,,sysbio.metadataTemplates-biospecimen.invitro,,,template
-biospecimen_metadata_template,SysBio AD biospecimen metadata template schema,,"Component, individualID, specimenID, specimenIdSource, collectionMethod, freezeThawCycles, organ, tissue, isPostMortem, BrodmannArea, nucleicAcidSource, cellType, samplingAge, samplingAgeUnits, sampleStatus, fastingState, visitNumber, assay, treatmentType, treatmentDose",,False,ManifestTemplate,,sysbio.metadataTemplates-ad.biospecimen,,,template
+biospecimen_metadata_template,SysBio AD biospecimen metadata template schema,,"Component, individualID, specimenID, specimenIdSource, collectionMethod, freezeThawCycles, organ, tissue, isPostMortem, BrodmannArea, nucleicAcidSource, nucleicAcidType, cellType, samplingAge, samplingAgeUnits, sampleStatus, fastingState, visitNumber, assay, treatmentType, treatmentDose",,False,ManifestTemplate,,sysbio.metadataTemplates-ad.biospecimen,,,template
 file_annotation_template,AD file annotation template schema,,"Component, Filename, individualID, specimenID, isMultiSpecimen, assay, fileFormat, consortium, study, grant, resourceType, dataType, dataSubtype, metadataType, analysisType, isModelSystem, chromosome",,False,ManifestTemplate,,sysbio.metadataTemplates-ad.manifest,,,template
 individual_animal_metadata_template,SysBio individual animal metadata template schema,,"Component, individualID, individualIdSource, species, sexChromosome, dateBirth, dateDeath, sex, genotype, genotypeBackground, room, litter, matingID, treatmentDose, modelSystemName",,False,ManifestTemplate,,sysbio.metadataTemplates-individual.animal,,,template
 individual_animal_MODEL-AD_metadata_template,individual animal metadata template schema for MODEL-AD Consortium,,"Component, individualID, climbID, microchipID, birthID, matingID, individualIdSource, materialOrigin, sex, species, generation, dateBirth, ageDeath, ageDeathUnits, brainWeight, rodentWeight, rodentDiet, bedding, room, waterpH, treatmentDose, treatmentType, stockNumber, genotype, genotypeBackground, modelSystemName, strainOfficialName",,False,ManifestTemplate,,sysbio.metadataTemplates-modelad.individual.animal,,,template