assemble *.model.csv from modules directory

Author: github-actions[bot]

AD.model.csv

@@ -975,7 +975,7 @@ nIndividuals,Number of individuals in a pooled Drosophila sample,,,,False,Manife
 nMale,Number of male individuals in a pooled Drosophila sample,,,,False,ManifestColumn,,sage.annotations-experimentalData.nMale-0.0.2,,integer,drosophila
 nucleicAcidSource,,"bulk cell, single cell, bulk nuclei, single nucleus, mitochondria, sorted cells, sorted nuclei, cfDNA, not applicable",,,False,ManifestColumn,,sage.annotations-ngs.nucleicAcidSource-0.0.3,,string,biospecimen
 nucleicAcidType,The nucleic acid type of the biospecimen which includes DNA (deoxyribonucleic acid) and RNA (ribonucleic acid),"RNA, DNA, Not applicable",,,False,ManifestColumn,,sage.annotations-ngs.nucleicAcidType-0.0.3,,string,biospecimen
-nucleiEnrichmentProtocol,Describes the procedure by which the concentration of an entity of interest in a sample is increased. (nuclei-specific),"single-nucleus RNA-seq assay, Other",,,False,ManifestColumn,,http://www.ebi.ac.uk/efo/EFO_0009089,,string,sequencing
+nucleiEnrichmentProtocol,Describes the procedure by which the concentration of an entity of interest in a sample is increased. (nuclei-specific),"single-nucleus RNA-seq assay, VINE-seq, Other",,,False,ManifestColumn,,http://www.ebi.ac.uk/efo/EFO_0009089,,string,sequencing
 numberCells,Number of cells or nuclei sequenced,,,,False,ManifestColumn,,sage.annotations-experimentalData.numberCells-0.0.2,,integer,sequencing
 organ,A unique macroscopic (gross) anatomic structure that performs specific functions. It is composed of various tissues. An organ is part of an anatomic system or a body region.,"blood, bone marrow, brain, breast, Bursa Of Fabricius, cerebrospinal fluid, colon, kidney, large intestine, liver, lung, lymph node, mammary gland, nerves, nose, ovary, pancreas, prostate, skin, spleen",,,True,ManifestColumn,,sage.annotations-experimentalData.organ-0.0.4,,string,biospecimen
 passage,Number of times a cell culture has been subcultured,,,,False,ManifestColumn,,sage.annotations-experimentalData.passage-0.0.2,,integer,biospecimen
@@ -1024,7 +1024,7 @@ stockNumber,Source identifier for model (JAX stock or MMRRC strain or RRID). Exa
 strainCommonName,"This is a brief and unique and more common identifier for the strains used. This string will match the Common Name field on JAX. For example, the common name for the C57BL/6J mouse is B6.",,,,False,ManifestColumn,,sage.annotations-neuro.strainCommonName-0.0.1,,string,MODEL-AD
 strainOfficialName,This serves as a unique identifier for specific genetic lines or populations of model organisms used in the research. For example the official name for the common  B6J Strain#:000664  mouse is C57BL/6J,,,,False,ManifestColumn,,sage.annotations-neuro.officialName-0.0.1,,string,MODEL-AD
 study,Study,"3Dchromatin, ABC-DS, Abeta_microglia, ACOM, ACT, AD_ADRD_Exposome, AD-BXD, ADAMTS7, ADAtlas_Archive, ADMC_ADNI_BakerLipidomics, ADMC_ADNI_Biocrates_MxP_Q500, ADMC_ADNI_NightingaleNMR, ADMC_ADNI_UHawaiiGutMetabolites, ADMC_ADNI1, ADMC_ADNI2-GO, ADMC_UPenn, Aging-PheWAS, AGMP_ANIMAL_MODELS, AGMP_TULSA_1000_LIBR, AMP-AD_DiverseCohorts, APOE-TR, APOE4_Myelination, APOEPSC, Ast10_Communication, Banner, BCM-DMAS, BipSeq, BLSA, BPSD_AD_AnimalStudy_NU, BrainGVEX, BroadAstrom109, BroadiPSC, BroadMDMi, CD74-IHC, CHDWB, CMC, CMC_HBCC, CMC-PEC, CNON, CUIMC2_Mult, CUMC_Compounds_Microglia, DAM Models_CU, DiCAD, diseasePseudotime, DivCo_HS, DukeAD_PTSD, ELPSCRNA, Emory_ADRC, Emory_Levey_300_CSF_FNIH, EmoryDrosophilaTau, EpiGABA, EpiMap, eQTLmetaAnalysis, FreshMicro, HBI_scRNAseq, HBTRC, HDAC1-cKOBrain, HumanFC, IL10_APPmouse, iNiAstshRNA, IntegrativePathwayAnalysis, iPSC, iPSC-HiC, iPSCAstrocytes, iPSCMicroglia, ISB_Taner_CollagenDomain, ISB_Taner_Cxcl10, ISB_Taner_PTN_MDK, ISB_Taner_sIL10r_sIL4r, ISB_Taner_TGFbeta, Jax.IU.Pitt_APOE4.Trem2.R47H, Jax.IU.Pitt_APP.PS1, Jax.IU.Pitt_Levetiracetam-5XFAD, Jax.IU.Pitt_LOAD2.PrimaryScreen, Jax.IU.Pitt_MicrobiomePilot, Jax.IU.Pitt_PrimaryScreen, Jax.IU.Pitt_StrainValidation, Jax.IU.Pitt_Verubecestat_5XFAD, Jax.IU.Pitt.Proteomics_Metabolomics_Pilot, LBP, LillyMicroglia, LLFS, lncRNA Pilot, MARS WISCONSIN, MayoeGWAS, MayoHippocampus, MayoLOADGWAS, MayoPilotRNAseq, MayoRNAseq, mCITE-Seq, MC_snRNA, MC-BrAD, MC-CAA, MCMPS, MEF2_Resilience, MindPhenomeKB, miR155, MIT_ROSMAP_Multiomics, MOA-PAD, MODEL-AD_5XFAD, MODEL-AD_Abca7_APOE4_Trem2, MODEL-AD_APOE4_KI, MODEL-AD_APOE4_Trem2, MODEL-AD_Ceacam_KO_APOE4_Trem2, MODEL-AD_hAbeta_KI, MODEL-AD_Harmonization, MODEL-AD_hCR1_KI_on_APOE4_Trem2, MODEL-AD_hTau_Trem2, MODEL-AD_Il1rapKO_APOE4_Trem2_exon2KO, MODEL-AD_Mthfr_APOE4_Trem2, MODEL-AD_Rat_F344, MODEL-AD_Trem2_R47H, MouseHAL, MRGWAS, MSBB, MSBB_ArrayTissuePanel, MSDM, MSMM, MSSMiPSC, mtDNA_AD, NAPS, NHP-Chimpanzee, NHP-Macaque, NPS-AD, OFMM, omicsADDS, Organoid_scRNAseq, Plxnb1_KO, RADEL, RNAseq_Harmonization, rnaSeqReprocessing, rnaSeqSampleSwap, ROSMAP, ROSMAP_bsSeq, ROSMAP_CellTypeSpecificHA, ROSMAP_CognitiveResilience, ROSMAP_Lipidomics_Emory, ROSMAP_MammillaryBody, ROSMAP_nucleus_hashing, ROSMAP-IA, ROSMAP-IN, RR_APOE4, scRNAseq_microglia_wild_ADmice, SEA-AD, SMIB-AD, snRNAseqAD_TREM2, StJude_BannerSun, SUNYStrokeModel, SuperAgerEpiMap, SV_xQTL, SWS, SY5Y_Emory, SY5Y_REST, T Cell_AD, TASTPM, TAUAPPms, TauD35, Trisomy21iN, TS-RNAseq, TWAS, TyrobpKO, TyrobpKO_AppPs1, U1-70_PrimaryCellCulture, UAB_ADRC, UCI_3xTg-AD, UCI_ABCA7, UCI_Apoe-Ch, UCI_BIN1, UCI_CCLines, UCI_Microbiome, UCI_Multiomics, UCI_PrimaryScreen, UCI_StrainValidation, UCI_Trem2_Cuprizone, UCI_Trem2-R47H_NSS, UCLA-ASD, UCSF_MAC, UFLOR_ABI3_GNGT2, UPenn, VirusResilience_Banner, VirusResilience_iPSC, VirusResilience_LCL, VirusResilience_Mayo.MSBB.ROSMAP, VirusResilience_Organoids, VMC, WallOfTargets, WGBS Pilot, WGS_Harmonization, WHICAP_Immunoprofiling, Yale-ASD",,,True,ManifestColumn,,sage.annotations-neuro.study-0.0.57,,string,ADKP
-targetCellTypeEnrichment,Refers to the process of increasing the proportion of target cell types in a sample.,"vein endothelial cell, Other",,,False,ManifestColumn,,https://cytometry.mlsascp.com/cell-enrichment.html,,string,sequencing
+targetCellTypeEnrichment,Refers to the process of increasing the proportion of target cell types in a sample.,"vein endothelial cell, vascular intima nuclei, Other",,,False,ManifestColumn,,https://cytometry.mlsascp.com/cell-enrichment.html,,string,sequencing
 TDP43,TDP Whole Brain (dichotomous). Calculated using the categories in TDP_3 - if any of the amygdala hippocampus entorhinal or neocortex are positive it is yes. If assessed and negative for the above it is no,"No, Yes, missing or unknown",,,False,ManifestColumn,,sage-annotations-clinical.TDP43-0.0.2,,string,clinical
 TDP_3,TDP-3 Component,"No TDP_3, Amygdala, Hippocampus or Etorhinal, Neocortex, missing or unknown",,,False,ManifestColumn,,sage-annotations-clinical.TDP_3-0.0.2,string,,clinical
 TDP_5,TDP Stage; Assumes that TDP progresses from brainstem>amygdala>hippocampus>inferior temporal cortex>neocortex,"No TDP_5, Brainstem/Spinal Cord, Amygdala, Hippocampus, Entorhinal, Neocortex, missing or unknown",,,False,ManifestColumn,,sage-annotations-clinical.TDP_5-0.0.2,string,,clinical