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Copy file name to clipboardExpand all lines: AD.model.csv
+2-1Lines changed: 2 additions & 1 deletion
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@@ -992,7 +992,7 @@ spectrometerFrequency,The frequency at which a spectrometer causes hydrogen atom
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stockNumber,Source identifier for model (JAX stock or MMRRC strain or RRID). Example: JAX stock #: 004807,,,,False,ManifestColumn,,sage.annotations-neuro.stockNumber-0.0.1,,string,MODEL-AD
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strainCommonName,"This is a brief and unique and more common identifier for the strains used. This string will match the Common Name field on JAX. For example, the common name for the C57BL/6J mouse is B6.",,,,False,ManifestColumn,,sage.annotations-neuro.strainCommonName-0.0.1,,string,MODEL-AD
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strainOfficialName,This serves as a unique identifier for specific genetic lines or populations of model organisms used in the research. For example the official name for the common B6J Strain#:000664 mouse is C57BL/6J,,,,False,ManifestColumn,,sage.annotations-neuro.officialName-0.0.1,,string,MODEL-AD
TDP43,TDP Whole Brain (dichotomous). Calculated using the categories in TDP_3 - if any of the amygdala hippocampus entorhinal or neocortex are positive it is yes. If assessed and negative for the above it is no,"No, Yes, missing or unknown",,,False,ManifestColumn,,sage-annotations-clinical.TDP43-0.0.2,,string,clinical
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TDP_3,TDP-3 Component,"No TDP_3, Amygdala, Hippocampus or Etorhinal, Neocortex, missing or unknown",,,False,ManifestColumn,,sage-annotations-clinical.TDP_3-0.0.2,string,,clinical
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TDP_5,TDP Stage; Assumes that TDP progresses from brainstem>amygdala>hippocampus>inferior temporal cortex>neocortex,"No TDP_5, Brainstem/Spinal Cord, Amygdala, Hippocampus, Entorhinal, Neocortex, missing or unknown",,,False,ManifestColumn,,sage-annotations-clinical.TDP_5-0.0.2,string,,clinical
CMC-PEC,Data from the CMC cohorts funded through PsychENCODE grants,,,,,study,,https://www.synapse.org/#!Synapse:syn21961394,,string,ADKP
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CMC_HBCC,The CommonMind Consortium Human Brain Collection Core Cohort,,,,,study,,,,string,ADKP
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CNON,Cultured Neuronal cells derived from Olfactory Neuroepithelium,,,,,study,,https://www.synapse.org/#!Synapse:syn4590897,,string,ADKP
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DAM Models_CU,The De Jager_CUMC_Development of a Human Disease-associated Microglia Model System Study,,,,,study,,https://adknowledgeportal.synapse.org/Explore/Studies/DetailsPage/StudyDetails?Study=syn64332552,,string,ADKP
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DiCAD,"Interdisciplinary Research to Understand the Interplay of Diabetes, Cerebrovascular disease and Alzheimer's disease",,,,,study,,https://www.synapse.org/#!Synapse:syn9944859,,string,ADKP
DukeAD_PTSD,"The Duke Study of Shared Genetic, Epigenetic, and Transcriptomic Profiles Between AD and PTSD study",,,,,study,,https://www.synapse.org/#!Synapse:syn23585917,,string,ADKP
3Dchromatin,The neuronal and glial 3D chromatin architecture study,,,,,study,,https://www.synapse.org/#!Synapse:syn21754060,,string,ADKP
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ABC-DS,The Alzheimer's Biomarkers Consortium - Down Syndrome (ABC-DS) Study,,,,,study,,https://adknowledgeportal.synapse.org/Explore/Studies/DetailsPage?Study=syn38190930,,string,ADKP
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Abeta_microglia,The differential transcriptomic responses of microglia to Ab peptide aggregates (Abeta_microglia) study,,,,,study,,https://adknowledgeportal.synapse.org/Explore/Studies/DetailsPage?Study=syn24828089,,string,ADKP
CMC_HBCC,The CommonMind Consortium Human Brain Collection Core Cohort,,,,,study,,,,string,ADKP
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CMC-PEC,Data from the CMC cohorts funded through PsychENCODE grants,,,,,study,,https://www.synapse.org/#!Synapse:syn21961394,,string,ADKP
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CNON,Cultured Neuronal cells derived from Olfactory Neuroepithelium,,,,,study,,https://www.synapse.org/#!Synapse:syn4590897,,string,ADKP
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DAM Models_CU,The De Jager_CUMC_Development of a Human Disease-associated Microglia Model System Study,,,,,study,,https://adknowledgeportal.synapse.org/Explore/Studies/DetailsPage/StudyDetails?Study=syn64332552,,string,ADKP
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DiCAD,"Interdisciplinary Research to Understand the Interplay of Diabetes, Cerebrovascular disease and Alzheimer's disease",,,,,study,,https://www.synapse.org/#!Synapse:syn9944859,,string,ADKP
DukeAD_PTSD,"The Duke Study of Shared Genetic, Epigenetic, and Transcriptomic Profiles Between AD and PTSD study",,,,,study,,https://www.synapse.org/#!Synapse:syn23585917,,string,ADKP
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