- Continuous integration smoke-test workflow and status badge.
- Docker container support with build context exclusions.
- Citation metadata for Zenodo archival.
- Public portfolio README overview and workflow diagram.
- Normalized release citation text for the public archive.
- Fixed antigenic-site TSV writing and script compilation.
- Declared BAM/index outputs in the Snakemake DAG so downstream rules can be resolved reproducibly.
- Documented coverage outputs in the default workflow target.
- Improved lightweight validation commands for clean external checkouts.
- Repository hygiene rules for private data, generated outputs, and local environment files.
- Initial public pipeline release for post-culture whole-capsid poliovirus NGS analysis.