Release v1.1.0 (#2696)

* v1.1.0 draft

* finish

Author: MatthewMiddlehurst

README.md

@@ -13,7 +13,7 @@ We strive to provide a broad library of time series algorithms including the
 latest advances, offer efficient implementations using numba, and interfaces with other
 time series packages to provide a single framework for algorithm comparison.
 
-The latest `aeon` release is `v1.0.0`. You can view the full changelog
+The latest `aeon` release is `v1.1.0`. You can view the full changelog
 [here](https://www.aeon-toolkit.org/en/stable/changelog.html).
 
 Our webpage and documentation is available at https://aeon-toolkit.org.

aeon/__init__.py

@@ -1,3 +1,3 @@
 """aeon toolkit."""
 
-__version__ = "1.0.0"
+__version__ = "1.1.0"

docs/changelog.md

@@ -9,6 +9,7 @@ To stay up to date with aeon releases, subscribe to aeon
 [here](https://libraries.io/pypi/aeon) or follow us on
 [Twitter](https://twitter.com/aeon_toolbox).
 
+- [Version 1.1.0](changelogs/v1.1.md)
 - [Version 1.0.0](changelogs/v1.0.md)
 - [Version 0.11.1](changelogs/v0/v0.11.md)
 - [Version 0.11.0](changelogs/v0/v0.11.md)

docs/changelogs/v1.0.md

@@ -9,7 +9,7 @@ has helped make this release possible.
 This major release includes breaking changes that could not happen in a regular
 minor release. This includes the removal of the old forecasting wrapper-based code,
 the datatypes module and the previous transformer module. Our focus now is on
-writing more efficient code based on efficient array based bespoke implementations.
+writing efficient code based on array-based bespoke implementations.
 
 ## Highlights
 

docs/changelogs/v1.1.md

@@ -0,0 +1,294 @@
+# v1.1.0
+
+April 2025
+
+## Highlights
+
+- Python 3.13 is now supported and dependency bounds have been raised
+- `df-list` collections now require (`n_cases`, `n_channels`, `n_timepoints`) formatting.
+Make sure each dataframe in the list has channels as the first dimension and timepoints are the second.
+- The ROCKAD anomaly detector has been added ({user}`pattplatt`)
+- THe KASBA clusterer has been added ({user}`chrisholder`)
+- Lots of documentation improvements and bug fixes
+
+## Anomaly Detection
+
+### Documentation
+
+- [DOC] Anomaly Detection Overview Notebook ({pr}`2446`) {user}`itsdivya1309`
+
+### Enhancements
+
+- [ENH] Added ROCKAD anomaly detector to aeon ({pr}`2376`) {user}`pattplatt`
+- [ENH] Replace `prts` metrics ({pr}`2400`) {user}`aryanpola`
+
+## Benchmarking
+
+### Deprecation
+
+- [MNT,DEP] _binary.py metrics deprecated  ({pr}`2600`) {user}`aryanpola`
+
+### Documentation
+
+- Fix docstring inconsistencies in benchmarking module (resolves #809) ({pr}`2735`) {user}`adityagh006`
+
+### Enhancements
+
+- [ENH] Replace `prts` metrics ({pr}`2400`) {user}`aryanpola`
+- [ENH] Remove MutilROCKETRegressor from alias mapping ({pr}`2623`) {user}`Kaustbh`
+- [ENH] Hard-Coded Tests for `test_metrics.py` ({pr}`2672`) {user}`aryanpola`
+
+### Maintenance
+
+- [MNT,DEP] _binary.py metrics deprecated  ({pr}`2600`) {user}`aryanpola`
+
+## Classification
+
+### Bug Fixes
+
+- [BUG] Passed stride parameter to LITETimeClassifier ({pr}`2502`) {user}`kavya-r30`
+- [BUG] LITE Network : Fixed list arguments ({pr}`2510`) {user}`kavya-r30`
+
+### Documentation
+
+- [DOC] Add LITETimeClassifier Example to Classification Notebook ({pr}`2419`) {user}`sumana-2705`
+- [DOC] Inserting the right paper reference ({pr}`2440`) {user}`adilsonmedronha`
+- [DOC] LITE Time classifier metrics ({pr}`2464`) {user}`dschrempf`
+- [DOC] Updated docstring to clarify class_weight parameter in MRHydraClassifier ({pr}`2505`) {user}`Akhil-Jasson`
+- [DOC] added type hints to 'classification->convolution_based' module ({pr}`2494`) {user}`YashviMehta03`
+- [DOC] Documentation improvement of BaseDeepClassifier and BaseCollectionEstimator ({pr}`2516`) {user}`kevinzb56`
+- [DOC] Add 'Raises' section to docstring (#1766) ({pr}`2484`) {user}`Nikitas100`
+
+### Enhancements
+
+- [ENH] Added possibility for pooling strides in TimeCNN ({pr}`2485`) {user}`kavya-r30`
+- [ENH] Replace SFA with SFAFast in REDCOMETS ({pr}`2418`) {user}`itsdivya1309`
+- [ENH] Added class weights to feature based classifiers ({pr}`2512`) {user}`lucifer4073`
+- [ENH] Set `outlier_norm` default to True for Catch22 estimators ({pr}`2659`) {user}`tanishy7777`
+
+### Maintenance
+
+- [MNT] Fixed wrong type annotations for aeon classes ({pr}`2488`) {user}`shinymack`
+- [MNT] Raise version bound for `scikit-learn` 1.6 ({pr}`2486`) {user}`MatthewMiddlehurst`
+- [MNT] Remove REDCOMETs from testing exclusion list ({pr}`2630`) {user}`MatthewMiddlehurst`
+
+## Clustering
+
+### Documentation
+
+- [DOC] Update Partitional clustering notebook ({pr}`2483`) {user}`Akhil-Jasson`
+- [DOC] Notebook on Feature-based Clustering ({pr}`2579`) {user}`itsdivya1309`
+
+### Enhancements
+
+- [ENH] KASBA clusterer ({pr}`2428`) {user}`chrisholder`
+- [ENH] Removed Reshape Layer from Deep Learning Clusterers ({pr}`2495`) {user}`kavya-r30`
+- [ENH] Adds kdtw kernel support for kernelkmeans ({pr}`2645`) {user}`tanishy7777`
+- [ENH] Add dummy clusterer tags ({pr}`2551`) {user}`MatthewMiddlehurst`
+
+### Maintenance
+
+- [MNT] Fix random state deep clustering checking test ({pr}`2528`) {user}`hadifawaz1999`
+- [MNT] Raise version bound for `scikit-learn` 1.6 ({pr}`2486`) {user}`MatthewMiddlehurst`
+
+## Datasets
+
+### Enhancements
+
+- [ENH] Collection conversion cleanup and `df-list` fix ({pr}`2654`) {user}`MatthewMiddlehurst`
+
+## Distances
+
+### Bug Fixes
+
+- [BUG, ENH] SFA fix: Std-Normalization, as used in BOSS and WEASEL models, is potentially harmful for lower bounding ({pr}`2461`) {user}`patrickzib`
+
+### Documentation
+
+- [DOC] ddtw_distance Documentation Fix ({pr}`2443`) {user}`notaryanramani`
+- [DOC] Distance function notebook #2395 ({pr}`2487`) {user}`kevinzb56`
+
+### Enhancements
+
+- [BUG, ENH] SFA fix: Std-Normalization, as used in BOSS and WEASEL models, is potentially harmful for lower bounding ({pr}`2461`) {user}`patrickzib`
+- [ENH] Adds support for distances that are asymmetric but supports unequal length ({pr}`2613`) {user}`tanishy7777`
+- [ENH] Support for unequal length in itakura parallelogram ({pr}`2647`) {user}`tanishy7777`
+- [ENH] Implement DTW with Global alignment ({pr}`2565`) {user}`tanishy7777`
+
+## Forecasting
+
+### Documentation
+
+- [DOC] Added Docstring for regression forecasting ({pr}`2564`) {user}`kavya-r30`
+
+### Enhancements
+
+- [ENh] Forecasting tests ({pr}`2427`) {user}`TonyBagnall`
+
+## Networks
+
+### Bug Fixes
+
+- [BUG] LITE Network : Fixed list arguments ({pr}`2510`) {user}`kavya-r30`
+
+### Enhancements
+
+- [ENH] Added possibility for pooling strides in TimeCNN ({pr}`2485`) {user}`kavya-r30`
+- [ENH] Add and Validate `n_layers`, `n_units`, `activation` & `dropout_rate` kwargs to MLPNetwork ({pr}`2338`) {user}`aadya940`
+- [ENH] Test coverage for AEResNetNetwork Improved ({pr}`2518`) {user}`lucifer4073`
+- [ENH] Test coverage for MLP Network improved ({pr}`2537`) {user}`shinymack`
+- [ENH] Test coverage for FCNNetwork Improved  ({pr}`2559`) {user}`lucifer4073`
+- [ENH] Test coverage for AEFCNNetwork Improved  ({pr}`2558`) {user}`lucifer4073`
+- [ENH] Test coverage for TimeCNNNetwork Improved ({pr}`2534`) {user}`lucifer4073`
+- [ENH] Test coverage for Resnet Network ({pr}`2553`) {user}`kavya-r30`
+
+## Regression
+
+### Bug Fixes
+
+- [BUG] LITE Network : Fixed list arguments ({pr}`2510`) {user}`kavya-r30`
+
+### Documentation
+
+- [DOC] Base collection class docstring formatting ({pr}`2452`) {user}`TonyBagnall`
+- [DOC] Inconsistent double qoutes in regression module ({pr}`2640`) {user}`Val-2608`
+
+### Maintenance
+
+- [MNT] Fixed wrong type annotations for aeon classes ({pr}`2488`) {user}`shinymack`
+- [MNT] Raise version bound for `scikit-learn` 1.6 ({pr}`2486`) {user}`MatthewMiddlehurst`
+
+## Segmentation
+
+### Enhancements
+
+- [ENH] Remove test exclusions ({pr}`2409`) {user}`TonyBagnall`
+
+## Transformations
+
+### Bug Fixes
+
+- [BUG] add ExpSmoothingSeriesTransformer and MovingAverageSeriesTransformer to __init__ ({pr}`2550`) {user}`Cyril-Meyer`
+- [BUG] SevenNumberSummary bugfix and input rename ({pr}`2555`) {user}`MatthewMiddlehurst`
+
+### Documentation
+
+- [DOC] Base collection class docstring formatting ({pr}`2452`) {user}`TonyBagnall`
+- [DOC] Create smoothing filters notebook ({pr}`2547`) {user}`Cyril-Meyer`
+- [DOC] Clarify documentation regarding unequal length series limitation ({pr}`2589`) {user}`Kaustbh`
+
+### Enhancements
+
+- [ENH] Refactor BinSegSegmenter to BinSegmenter ({pr}`2408`) {user}`TonyBagnall`
+- [ENH] Remove test exclusions ({pr}`2409`) {user}`TonyBagnall`
+
+## Unit Testing
+
+### Enhancements
+
+- [ENH] Remove test exclusions ({pr}`2409`) {user}`TonyBagnall`
+- [ENh] Forecasting tests ({pr}`2427`) {user}`TonyBagnall`
+- [ENH] adjust test for non numpy output ({pr}`2517`) {user}`TonyBagnall`
+- [ENH] Collection conversion cleanup and `df-list` fix ({pr}`2654`) {user}`MatthewMiddlehurst`
+- [MNT,ENH]  Update to allow Python 3.13 ({pr}`2608`) {user}`MatthewMiddlehurst`
+
+### Maintenance
+
+- [MNT] Testing fixes ({pr}`2531`) {user}`MatthewMiddlehurst`
+- [MNT] Fix random state deep clustering checking test ({pr}`2528`) {user}`hadifawaz1999`
+- [MNT] Skip some excected results tests when numba is disabled ({pr}`2639`) {user}`MatthewMiddlehurst`
+- [MNT] Remove REDCOMETs from testing exclusion list ({pr}`2630`) {user}`MatthewMiddlehurst`
+- [MNT,ENH]  Update to allow Python 3.13 ({pr}`2608`) {user}`MatthewMiddlehurst`
+
+## Visualisations
+
+### Documentation
+
+- [DOC] Added Missing Docstring for Plot Pairwise Distance Matrix ({pr}`2609`) {user}`kavya-r30`
+
+### Enhancements
+
+- [ENH] Test Coverage for Pairwise Distance ({pr}`2590`) {user}`kavya-r30`
+- [ENH] `best_on_top` addition in `plot_pairwise_scatter` ({pr}`2655`) {user}`aryanpola`
+
+## Other
+
+### Documentation
+
+- [DOC] Contributing guide and template changes ({pr}`2423`) {user}`MatthewMiddlehurst`
+- [DOC] Created a adding_typehints.md in developers_guide that Fixes issue #1857 ({pr}`2424`) {user}`vedpawar2254`
+- [DOC] Add comment to readme.md ({pr}`2450`) {user}`TonyBagnall`
+- [DOC] Contributing readme and other contributing updates ({pr}`2445`) {user}`MatthewMiddlehurst`
+- [DOC] add note to install pandoc ({pr}`2489`) {user}`inclinedadarsh`
+- [DOC] Added search functionality for estimator overview table ({pr}`2496`) {user}`kavya-r30`
+- [DOC] Fixed</li> tags appearance on the end on list in partition clustering notebook ({pr}`2504`) {user}`kavya-r30`
+- [DOC] Update custom CSS for dataframe styling in documentation ({pr}`2508`) {user}`inclinedadarsh`
+- [DOC] Improve type hint guide and add link to the page. ({pr}`2532`) {user}`MatthewMiddlehurst`
+- [DOC] Fixed Output Error in Interval Based Notebook ({pr}`2620`) {user}`kavya-r30`
+- [DOC] Add GSoC announcement to web page ({pr}`2629`) {user}`MatthewMiddlehurst`
+- [DOC] Update dependencies.md ({pr}`2717`) {user}`TinaJin0228`
+- [DOC] re-running notebook for fixing error in cell output ({pr}`2597`) {user}`Kaustbh`
+- [DOC] Add 'Raises' section to docstring #1766 ({pr}`2617`) {user}`ayushsingh9720`
+- [DOC] Contributor docs update ({pr}`2554`) {user}`MatthewMiddlehurst`
+- [DOC] Add link to about us page and fix badge link in README ({pr}`2556`) {user}`MatthewMiddlehurst`
+- [DOC] Fixed a few spelling/grammar mistakes on TSC docs examples ({pr}`2738`) {user}`HaroonAzamFiza`
+
+### Enhancements
+
+- [ENH] Add sphinx event to add capability table to estimators' docs individually ({pr}`2468`) {user}`inclinedadarsh`
+- [DOC] Added search functionality for estimator overview table ({pr}`2496`) {user}`kavya-r30`
+- [ENH,MNT] Assign Bot (assigned issues>2) ({pr}`2702`) {user}`aryanpola`
+- [MNT,ENH] Assign-bot (Allow users to type alternative phrases for assingment) ({pr}`2704`) {user}`Ramana-Raja`
+
+### Maintenance
+
+- [MNT] Trying to diagnose ubuntu workflow failures ({pr}`2413`) {user}`MatthewMiddlehurst`
+- [MNT] Set upper bound on esig version ({pr}`2463`) {user}`chrisholder`
+- [MNT] Swapped tensorflow and pytorch to install only CPU version ({pr}`2416`) {user}`chrisholder`
+- [MNT] Temporary exclusion of REDCOMETS from CI ({pr}`2522`) {user}`MatthewMiddlehurst`
+- [MNT] Use MacOS for examples/ workflow ({pr}`2668`) {user}`shinymack`
+- [MNT] issue-assign-bot (prevent assignment on PRs) ({pr}`2703`) {user}`shinymack`
+- [MNT] Fix run_examples.sh exclusion ({pr}`2701`) {user}`MatthewMiddlehurst`
+- [MNT] Updated the release workflows ({pr}`2638`) {user}`MatthewMiddlehurst`
+- [ENH,MNT] Assign Bot (assigned issues>2) ({pr}`2702`) {user}`aryanpola`
+- [MNT,ENH] Assign-bot (Allow users to type alternative phrases for assingment) ({pr}`2704`) {user}`Ramana-Raja`
+
+### Other
+
+- [GOV] Infrastructure workgroup lead and voting ambiguity fix ({pr}`2426`) {user}`MatthewMiddlehurst`
+
+## Contributors
+
+The following have contributed to this release through a collective 90 GitHub Pull Requests:
+
+{user}`aadya940`,
+{user}`adilsonmedronha`,
+{user}`adityagh006`,
+{user}`Akhil-Jasson`,
+{user}`aryanpola`,
+{user}`ayushsingh9720`,
+{user}`chrisholder`,
+{user}`Cyril-Meyer`,
+{user}`dschrempf`,
+{user}`hadifawaz1999`,
+{user}`HaroonAzamFiza`,
+{user}`inclinedadarsh`,
+{user}`itsdivya1309`,
+{user}`Kaustbh`,
+{user}`kavya-r30`,
+{user}`kevinzb56`,
+{user}`lucifer4073`,
+{user}`MatthewMiddlehurst`,
+{user}`Nikitas100`,
+{user}`notaryanramani`,
+{user}`patrickzib`,
+{user}`pattplatt`,
+{user}`Ramana-Raja`,
+{user}`shinymack`,
+{user}`sumana-2705`,
+{user}`tanishy7777`,
+{user}`TinaJin0228`,
+{user}`TonyBagnall`,
+{user}`Val-2608`,
+{user}`vedpawar2254`,
+{user}`YashviMehta03`

docs/conf.py

@@ -199,7 +199,6 @@ def find_source():
 # documentation.
 
 html_theme_options = {
-    "announcement": "<em>Announcement</em>: aeon is taking part in the Google Summer of Code (GSoC) 2025! See the home page for more information.",  # noqa: E501
     "sidebar_hide_name": True,
     "top_of_page_button": "edit",
     "source_repository": "https://github.com/aeon-toolkit/aeon/",

docs/index.md

@@ -17,15 +17,6 @@ segmentation and similarity search.
 - We provide a range of tools for reproducing benchmarking results and evaluating time
   series algorithms implemented in `aeon` and other `scikit-learn` compatible packages.
 
-```{admonition} GSoC 2025
-`aeon` is participating in Google Summer of Code 2025 under the NumFOCUS umbrella. If
-you are interested in participating, please see our [GSoC 2025 project page](https://github.com/aeon-toolkit/aeon-admin/blob/main/gsoc/gsoc-2025-projects.md).
-Feel free to ask questions on the dedicated [GitHub discussion](https://github.com/aeon-toolkit/aeon/discussions/2530)
-or our [Slack channel](https://join.slack.com/t/aeon-toolkit/shared_invite/zt-22vwvut29-HDpCu~7VBUozyfL_8j3dLA).
-If you are interested in contributing, click on the "Contributing to aeon" link in the
-sidebar for a contribution guide. Applications close April 8th.
-```
-
 ## Community Channels
 
 **GitHub**: [github.com/aeon-toolkit/aeon](https://github.com/aeon-toolkit/aeon)

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "aeon"
-version = "1.0.0"
+version = "1.1.0"
 description = "A toolkit for machine learning from time series"
 authors = [
     {name = "aeon developers", email = "[email protected]"},