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[MNT] Release 0.8.0 (#1348)
* release prep * changelog * changelog * changelog * update notes * update notes * update notes * update notes
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‎README.md

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latest advances, offer efficient implementations using numba, and interfaces with other
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time series packages to provide a single framework for algorithm comparison.
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The latest `aeon` release is `v0.7.1`. You can view the full changelog
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The latest `aeon` release is `v0.8.0`. You can view the full changelog
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[here](https://www.aeon-toolkit.org/en/stable/changelog.html).
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Our webpage and documentation is available at https://aeon-toolkit.org.

‎aeon/__init__.py

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"""aeon."""
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"""aeon toolkit."""
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__version__ = "0.7.1"
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__version__ = "0.8.0"
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__all__ = ["show_versions"]
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‎docs/changelog.md

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[here](https://libraries.io/pypi/aeon) or follow us on
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[Twitter](https://twitter.com/aeon_toolbox).
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- [Version 0.8.0](changelogs/v0.8.md)
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- [Version 0.7.0](changelogs/v0.7.md)
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- [Version 0.6.0](changelogs/v0.6.md)
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- [Version 0.5.0](changelogs/v0.5.md)

‎docs/changelogs/v0.8.md

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# v0.8.0
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April 2024
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## Highlights
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- Deprecations from `0.7.0` have been removed, see the package deprecation sections for more details
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- `typing-extensions` has been added as a core dependency
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- The following deep learners are now available for regression: `IndividualLITERegressor`, `LITETimeRegressor` and `EncoderRegressor` (({user}`aadya940`) & {user}`AnonymousCodes911`)
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- The `HydraRegressor` and `MultiRocketHydraRegressor` algorithms have been implemented for regression module ({user}`MatthewMiddlehurst`)
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- A wrapper for the `tslearn` `LearningShapelets` classifier has been added ({user}`itsdivya1309`)
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- Support for unequal length in pairwise distance calculation for the SBD and MSM distances is now available, this will be expanded to other distances in time ({user}`CodeLionX`)
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## Benchmarking
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### Documentation
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- [DOC] Fix benchmarking notebooks ({pr}`1305`) {user}`TonyBagnall`
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### Maintenance
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- [MNT] xfail website reads that return a connection error ({pr}`1357`) {user}`TonyBagnall`
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## Classification
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### Bug Fixes
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- [BUG] Fix random state for deep learning models in classification/regression and clustering ({pr}`1271`) {user}`hadifawaz1999`
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- [BUG] ElasticEnsemble with `euclidean` and `twe` distance measures ({pr}`1288`) {user}`itsdivya1309`
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- [ENH] fixed sqr error ({pr}`1240`) {user}`AnonymousCodes911`
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### Enhancements
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- [ENH] Learning Shapelet Classifier ({pr}`1247`) {user}`itsdivya1309`
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### Deprecation
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- [DEP] Remove deprecated overloaded multiplication and sklearnpipeline ({pr}`1265`) {user}`TonyBagnall`
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- [DEP] remove deprecated the save_train_predictions parameter in BOSSEnsemble, CBOSS, T… ({pr}`1333`) {user}`TonyBagnall`
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- [DEP] remove support probabilities from weasel2 ({pr}`1335`) {user}`TonyBagnall`
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- [DEP] Deprecating ShapeDTW classifier, to be replaced with a newer correct version ({pr}`1367`) {user}`hadifawaz1999`
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### Documentation
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- [DOCS] hard code shapelet classifiers in notebook ({pr}`1331`) {user}`TonyBagnall`
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### Enhancements
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- [ENH] Update regression pipeline ({pr}`1279`) {user}`MatthewMiddlehurst`
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- [ENH] Loading unequal length, no missing values classification problems ({pr}`1157`) {user}`TonyBagnall`
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- [ENH] Tidy dummy estimators for classification and regression ({pr}`1281`) {user}`MatthewMiddlehurst`
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### Maintenance
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- [MNT] Changing deep learning save format from `.hdf5` to `.keras` ({pr}`1292`) {user}`hadifawaz1999`
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## Clustering
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### Bug Fixes
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- [BUG] fixed dba test ({pr}`1319`) {user}`chrisholder`
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- [BUG] Fix random state for deep learning models in classification/regression and clustering ({pr}`1271`) {user}`hadifawaz1999`
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### Maintenance
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- [MNT] Changing deep learning save format from `.hdf5` to `.keras` ({pr}`1292`) {user}`hadifawaz1999`
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- [MNT] Distance test refactor ({pr}`1294`) {user}`chrisholder`
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- [MNT] Type hint distance module ({pr}`1326`) {user}`chrisholder`
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## Datasets
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### Bug Fixes
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- [BUG] write_to_tsfile not writing header ({pr}`1329`) {user}`vNtzYy`
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- [BUG] Stop joining Nones ({pr}`1353`) {user}`TonyBagnall`
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### Enhancements
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- [ENH] Loading unequal length, no missing values classification problems ({pr}`1157`) {user}`TonyBagnall`
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### Maintenance
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[MNT] xfail website reads that return a connection error ({pr}`1357`) {user}`TonyBagnall`
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## Distances
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### Bug Fixes
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- [BUG] Unequal length bounding matrix fixes ({pr}`1161`) {user}`chrisholder`
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### Enhancements
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- [ENH] SBD and MSM: Support pairwise distance calculation for unequal length time series ({pr}`1287`) {user}`CodeLionX`
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- [ENH] Capability to use shape-dtw on precomputed transformation ({pr}`1323`) {user}`hadifawaz1999`
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### Maintenance
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- [MNT] Distance test refactor ({pr}`1294`) {user}`chrisholder`
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- [MNT] Type hint distance module ({pr}`1326`) {user}`chrisholder`
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## Regression
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### Bug Fixes
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- [BUG] Fix random state for deep learning models in classification/regression and clustering ({pr}`1271`) {user}`hadifawaz1999`
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### Enhancements
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- [ENH] Remove regression delegate file ({pr}`1280`) {user}`MatthewMiddlehurst`
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- [ENH] Updated EncoderRegressor ({pr}`1226`) {user}`AnonymousCodes911`
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- [ENH] Hydra and MultiRocketHydra for regression ({pr}`1207`) {user}`MatthewMiddlehurst`
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- [ENH] Refactored _TestRegressor in regression testing module to be a MockRegressor in testing/mock_estimators ({pr}`1213`) {user}`tvilight4`
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- [ENH] Add IndividualLITERegressor and LITETimeRegressor ({pr}`1221`) {user}`aadya940`
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- [ENH] Update regression pipeline ({pr}`1279`) {user}`MatthewMiddlehurst`
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- [ENH] Tidy dummy estimators for classification and regression ({pr}`1281`) {user}`MatthewMiddlehurst`
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- [ENH] Initializing metrics to "mean_squared_error" In Deep Learning Models ({pr}`1317`) {user}`harshithasudhakar`
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### Maintenance
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- [MNT] Changing deep learning save format from `.hdf5` to `.keras` ({pr}`1292`) {user}`hadifawaz1999`
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## Segmentation
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### Deprecation
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- [ENH] Deprecate annotators ({pr}`1306`) {user}`TonyBagnall`
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## Transformations
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### Bug Fixes
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- [BUG] RandomShapeletTransform stdev fix ({pr}`1324`) {user}`MatthewMiddlehurst`
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### Deprecation
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- [ENH] Deprecate transformers ({pr}`1307`) {user}`TonyBagnall`
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- [DEP] deprecate ElbowClass prior to move to dedicated package ({pr}`1336`) {user}`TonyBagnall`
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### Enhancements
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- [ENH] Enhancing `BaseCollectionTransformers`+Tidying `Utils` dir ({pr}`1328`) {user}`AnonymousCodes911`
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- [ENH] remove call to update in BaseCollectionTransformer ({pr}`1344`) {user}`TonyBagnall`
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### Maintenance
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- [MNT] Modified `test_base_rocketGPU.py` ({pr}`1325`) {user}`AnonymousCodes911`
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## Unit Testing
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### Enhancements
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- [ENH] Refactored _TestRegressor in regression testing module to be a MockRegressor in testing/mock_estimators ({pr}`1213`) {user}`tvilight4`
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### Maintenance
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- [MNT] added unequal length utils function ({pr}`1303`) {user}`chrisholder`
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- [MNT] Move estimator_checks to the Testing Module ({pr}`1312`) {user}`aadya940`
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## Visualisations
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### Enhancements
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- [ENH] Add plot_spectrogram ({pr}`1237`) {user}`aadya940`
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### Deprecation
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- [DEP] remove plotting from utils ({pr}`1334`) {user}`TonyBagnall`
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## Other
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### Deprecation
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- [DEP] Remove `mlflow` ({pr}`1285`) {user}`MatthewMiddlehurst`
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- [ENH] Remove deprecated performance metric classes ({pr}`1261`) {user}`TonyBagnall`
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- [DEP] remove deprecated 'save_transformed_data' and 'transformed_data_' in BaseIntervalForest, FreshPrince, STC, ({pr}`1332`) {user}`TonyBagnall`
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### Documentation
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- [DOC] Missing link for aeon-neuro ({pr}`1299`) {user}`harshithasudhakar`
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- [DOC] Updates to conform to `ruff` - `pydocstyle` hook ({pr}`1277`) {user}`AnonymousCodes911`
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- [DOC] Add clustering example to the README ({pr}`1354`) {user}`chrisholder`
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- [DOC] Update papers page and remove GSoC advertisements ({pr}`1368`) {user}`MatthewMiddlehurst`
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### Enhancements
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- [ENH] Remove deprecated performance metric classes ({pr}`1261`) {user}`TonyBagnall`
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- [ENH] Refactor dask converters ({pr}`1302`) {user}`TonyBagnall`
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- [ENH] Replace calls to check_is_scitype that return metadata with validate_input ({pr}`1290`) {user}`TonyBagnall`
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- [ENH] reduce warnings ({pr}`1337`) {user}`TonyBagnall`
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- [ENH] Replace mtype to scitype function ({pr}`1298`) {user}`TonyBagnall`
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### Maintenance
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- [MNT] Refactored any occurrence of '_instances' to '_cases'. 'series_length' to 'n_timepoints' and 'n_dims' to 'n_channels' ({pr}`1304`) {user}`chrisholder`
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- [MNT] Changes to `pyarrow` and `dask` in `all_extras` to fix CI ({pr}`1309`) {user}`MatthewMiddlehurst`
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- [MNT] Cleanup code in aeon.util.conversion module ({pr}`1289`) {user}`CodeLionX`
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- [MNT] Add new dependency: typing-extensions ({pr}`1327`) {user}`chrisholder`
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### Refactored
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- [ENH] Replace calls to check_is_scitype that return metadata with validate_input ({pr}`1290`) {user}`TonyBagnall`
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## Contributors
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The following have contributed to this release through a collective 57 GitHub Pull Requests:
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{user}`aadya940`,
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{user}`AnonymousCodes911`,
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{user}`chrisholder`,
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{user}`CodeLionX`,
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{user}`hadifawaz1999`,
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{user}`harshithasudhakar`,
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{user}`itsdivya1309`,
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{user}`MatthewMiddlehurst`,
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{user}`TonyBagnall`,
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{user}`tvilight4`,
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{user}`vNtzYy`

‎pyproject.toml

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[project]
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name = "aeon"
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version = "0.7.1"
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version = "0.8.0"
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description = "A toolkit for conducting machine learning tasks with time series data"
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authors = [
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{name = "aeon developers", email = "[email protected]"},

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