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Handle LOOM files based on genomic region #236

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@MaybeJustJames

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@MaybeJustJames

Make SCope handle new type of .loom files based on genomic regions instead of genes.
Such data can be generated by our method, cisTopic for instance.
The single-cell data will still be viewed in tSNEs, so this modification is minor and mainly deals
with translating a user query to the underlying data.

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