[Tutorial] [246] export_gene_activity_to_loom important in SCENIC+ analyses?

[yojetsharma]

1. When I run export_gene_activity_to_loom , I get a "TypeError: '<' not supported between instances of 'float' and 'str'". Maybe because there some NaNs in my cell type_annotations? But export_region_accessibility_to_loom works smoothly.
2. I checked the Cortex_pycisTopic tutorial but that ends with export_region_accessibility_to_loom.
   So, is this export_gene_activity_to_loom really necessary in SCENIC+ analyses? if yes, then how can I solve the aforementioned typeerror?

[SeppeDeWinter]

Hi @yojetsharma

For your first question: Could you share the entire stack trace including the exact command you ran?

For the second question: No, this function is not needed for the SCENIC+ analysis. So if you wish, you can skip it without issue.

All the best,

Seppe