remove CI-related items and a few stray references

Author: brianhenn

.github/pull_request_template.md

@@ -5,6 +5,5 @@ Changes:
 - Can group multiple related symbols on a single bullet
 
 - [ ] Tests added
-- [ ] If dependencies changed, "deps only" image rebuilt and "latest_deps_only_image.txt" file updated
 
 Resolves #<github issues> (delete if none)

.github/workflows/docs.yaml

@@ -8,21 +8,6 @@ on:
     branches:
       - main
 
-  # Add a button to manually trigger the workflow
-  workflow_dispatch:
-
-# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
-permissions:
-  contents: read
-  pages: write
-  id-token: write
-
-# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
-# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
-concurrency:
-  group: "pages"
-  cancel-in-progress: false
-
 jobs:
   build:
     runs-on: ubuntu-latest
@@ -49,15 +34,11 @@ jobs:
         run: |
           source .venv/bin/activate
           cd docs && make doctest html
-      - name: Upload to GitHub Pages
-        uses: actions/upload-pages-artifact@v3
-        with:
-          path: docs/_build/html
-  deploy:
-    runs-on: ubuntu-latest
-    # Only deploy on manual trigger or push to main
-    if: ${{ github.event_name == 'workflow_dispatch' || (github.event_name == 'push' && github.ref == 'refs/heads/main') }}
-    needs: build
-    steps:
       - name: Deploy to GitHub Pages
-        uses: actions/deploy-pages@v4
+        uses: peaceiris/actions-gh-pages@v3
+        if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
+        with:
+          publish_branch: gh-pages
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: docs/_build/
+          force_orphan: true

.github/workflows/tests.yaml

@@ -55,35 +55,3 @@ jobs:
       - name: Run pytest
         run: |
           make test_very_fast
-  gpu:
-    # These steps run on our self-hosted k8s GPU runners. See below for setup notes
-    # https://github.com/ai2cm/long-lived-infrastructure#installing-the-github-actions-runner-controller
-    runs-on: arc-runner-set
-    steps:
-      - uses: actions/checkout@v3
-      - name: Set environment variables
-        run: |
-          echo "CURRENT_WEEK=$(date +'%Y-%U')" >> $GITHUB_ENV
-      - uses: actions/setup-python@v4
-        with:
-          python-version: "3.11"
-      - uses: actions/cache@v4
-        with:
-          path: ${{ env.pythonLocation }}
-          key: ${{ env.CURRENT_WEEK }}-${{ env.pythonLocation }}-${{ hashFiles('requirements.txt') }}-${{ hashFiles('requirements-dev.txt') }}-${{ hashFiles('requirements-healpix.txt') }}-${{ hashFiles('constraints.txt') }}
-      - name: Install dependencies
-        run: |
-          sudo apt-get update
-          sudo apt-get install -y make git build-essential
-          python -m pip install uv
-          # can't use --system here because it doesn't work with --no-build-isolation and a healpix dependency
-          uv venv --python 3.11
-          uv pip install -c constraints.txt -e .[dev]
-          uv pip install --no-build-isolation -c constraints.txt -e .[dev,healpix]
-      - name: Run CUDA check and pytest
-        run: |
-            source .venv/bin/activate
-            export PATH=/usr/local/nvidia/bin:${PATH}
-            export LD_LIBRARY_PATH=/usr/local/nvidia/lib64:${LD_LIBRARY_PATH}
-            python3 fme/require_gpu.py
-            make test

.gitignore

@@ -1,6 +1,5 @@
 docs/available_modules.rst
 docs/_build
-filtered_repo/
 
 .vscode
 

.pre-commit-config.yaml

@@ -28,5 +28,4 @@ repos:
         (?x)^(
         .+/conf.py |
         .+/conftest.py |
-        fme/ace/models/makani_fcn2/.*
         )$

.readthedocs.yaml

@@ -17,7 +17,7 @@ build:
 
 # Build documentation in the "docs/" directory with Sphinx
 sphinx:
-  configuration: fme/docs/conf.py
+  configuration: docs/conf.py
 
 # Optionally build your docs in additional formats such as PDF and ePub
 # formats:
@@ -29,4 +29,5 @@ sphinx:
 # See https://docs.readthedocs.io/en/stable/guides/reproducible-builds.html
 python:
    install:
-   - requirements: fme/docs/requirements-pinned.txt
+   - requirements: docs/requirements.txt
+   - requirements: requirements.txt

Makefile

@@ -1,10 +1,7 @@
 VERSION ?= $(shell git rev-parse --short HEAD)
 IMAGE ?= fme
-REGISTRY ?= registry.nersc.gov/m4492/ai2cm
 ENVIRONMENT_NAME ?= fme
-USERNAME ?= $(shell beaker account whoami --format=json | jq -r '.[0].name')
 DEPLOY_TARGET ?= pypi
-BEAKER_WORKSPACE = ai2/ace
 
 ifeq ($(shell uname), Linux)
 	CONDA_PACKAGES=gxx_linux-64 pip
@@ -15,29 +12,9 @@ endif
 build_docker_image:
 	DOCKER_BUILDKIT=1 docker build --platform=linux/amd64 -f docker/Dockerfile -t $(IMAGE):$(VERSION) --target production .
 
-push_shifter_image: build_docker_image
-	docker tag $(IMAGE):$(VERSION) $(REGISTRY)/$(IMAGE):$(VERSION)
-	docker push $(REGISTRY)/$(IMAGE):$(VERSION)
-
-build_beaker_image: build_docker_image
-	beaker image create --name $(IMAGE)-$(VERSION) $(IMAGE):$(VERSION)
-
-build_podman_image:
-	podman-hpc build -f docker/Dockerfile -t $(IMAGE):$(VERSION) .
-
-migrate_podman_image: build_podman_image
-	podman-hpc migrate $(IMAGE):$(VERSION)
-
 enter_docker_image: build_docker_image
 	docker run -it --rm $(IMAGE):$(VERSION) bash
 
-launch_beaker_session:
-	./launch-beaker-session.sh $(USERNAME)/$(IMAGE)-$(VERSION)
-
-build_deps_only_image:
-	DOCKER_BUILDKIT=1 docker build --platform=linux/amd64 -f docker/Dockerfile -t $(IMAGE)-deps-only:$(VERSION) --target deps-only .
-	beaker image create $(IMAGE)-deps-only:$(VERSION) --name $(IMAGE)-deps-only-$(VERSION) --workspace ai2/ace-ci-tests
-
 
 # recommended to deactivate current conda environment before running this
 create_environment:

analysis-deps.txt

@@ -1,7 +1,5 @@
 # these are convenient to have installed for ad-hoc analysis but are not requirements of the "fme" package
 Bottleneck
-beaker-gantry>=1.12.0
-beaker-py
 bokeh>=3.1.0
 dask[distributed]
 ipywidgets

docker/Dockerfile

@@ -31,22 +31,4 @@ COPY . ${FME_DIR}
 RUN cd $FME_DIR && pip install --no-deps -e .
 
 # copy after install so editing scripts does not trigger reinstall
-COPY scripts ${FME_DIR}/scripts
-
-FROM base AS deps-only
-
-# install github cli and yq
-RUN apt-get update && apt-get install -y \
-    ca-certificates \
-    && curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | gpg --dearmor -o /usr/share/keyrings/githubcli-archive-keyring.gpg \
-    && echo "deb [signed-by=/usr/share/keyrings/githubcli-archive-keyring.gpg] https://cli.github.com/packages stable main" | tee /etc/apt/sources.list.d/github-cli.list > /dev/null \
-    && apt-get update && apt-get install -y gh \
-    && apt-get clean \
-    && rm -rf /var/lib/apt/lists/*
-
-RUN wget https://github.com/mikefarah/yq/releases/latest/download/yq_linux_amd64 -O /usr/bin/yq &&\
-chmod +x /usr/bin/yq
-
-COPY scripts/ci_beaker/entrypoint.sh /entrypoint.sh
-RUN chmod +x /entrypoint.sh
-ENTRYPOINT ["/entrypoint.sh"]
+COPY scripts ${FME_DIR}/scripts