Add new benchmarking scripts and results (#156)

* add new benchmarking scripts and results
* save results for eternity
* update according to review of @twicki

Author: ofuhrer

benchmarking/daint_single_node/run_all.sh renamed to benchmarking/daint_single_node/find_optimal_config.sh

@@ -5,8 +5,8 @@ workdir=/scratch/snx3000/olifu/benchmarking
 partition="normal --no-wait"
 #partition="debug"
 
-for config in c96 c128 c192 c256 ; do
-for compiler in gnu intel ; do
+for config in c128 ; do
+ for compiler in gnu intel ; do
 
   exe=/project/s1053/install/fv3gfs-fortran/${compiler}/fv3_64bit.exe
   module_env=/project/s1053/install/fv3gfs-fortran/${compiler}/module.env
@@ -39,6 +39,6 @@ for compiler in gnu intel ; do
   ./run_benchmark.py --hyperthreading    --threads_per_rank=8 --nodes_per_tile_side=1 --rank_layout=1 ${default_args}/${config}_${compiler}_yes_8_1x3
   ./run_benchmark.py --hyperthreading    --threads_per_rank=8 --nodes_per_tile_side=1 --rank_layout=2 ${default_args}/${config}_${compiler}_yes_8_3x1
 
-done
+ done
 done
 

benchmarking/daint_single_node/results_20210216.tar.gz

@@ -156,6 +156,7 @@ def run_benchmark(nodes_per_tile_side, threads_per_rank, hyperthreading, executa
 
 export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
 export CRAY_CUDA_MPS=1
+export OMP_STACKSIZE=32M
 
 if [ -f ./module.env ] ; then
   source ./module.env

benchmarking/daint_single_node/run_benchmark.py

@@ -0,0 +1,18 @@
+#!/bin/bash
+
+workdir=/scratch/snx3000/olifu/benchmarking
+\rm -rf "${workdir}"
+partition="normal --no-wait"
+
+for config in c96 c128 c192 c256 ; do
+ for compiler in gnu intel ; do
+
+  exe=/project/s1053/install/fv3gfs-fortran/${compiler}/fv3_64bit.exe
+  module_env=/project/s1053/install/fv3gfs-fortran/${compiler}/module.env
+  default_args="--timesteps=11 --force --partition=${partition} --executable=${exe} --module_env=${module_env} config/${config}.yml ${workdir}/"
+  
+  ./run_benchmark.py --hyperthreading --threads_per_rank=4 --nodes_per_tile_side=1 --rank_layout=2 ${default_args}/${config}_${compiler}_yes_4_2x3
+
+ done
+done
+