traces(31051/openai/gpt-5.4): run 25979822693

Author: github-actions[bot]

traces/25979822693/ISSUE_COMMENTS.md

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+Implemented the requested follow-up in PR #<NN>.
+
+Summary:
+- renamed the three affected terms to use `animal ...` wording for consistency with existing GO naming precedent:
+  - `GO:0045136` `development of animal secondary sexual characteristics`
+  - `GO:0046543` `development of animal secondary female sexual characteristics`
+  - `GO:0046544` `development of animal secondary male sexual characteristics`
+- retained the existing EXACT synonyms with the older generic wording for searchability
+- kept the parent-level `only_in_taxon Metazoa` constraint on `GO:0045136`
+
+`make travis_build` passes after the update.
+
+---
+🤖 **Generated by opencode agent**
+- Runtime: `opencode`
+- Model: `openai/gpt-5.4`
+- Agent config: `ai4curation/go-ontology-agent-config@v9:.`
+- Iteration: `1`
+- Run: [View workflow run](https://github.com/ai4curation/eval-ont-agent-go/actions/runs/25979822693)

traces/25979822693/PR_COMMENTS.md

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+Implemented the issue #31051 follow-up requested in the thread: replace the interim `sensu Metazoa` labels with `animal ...` labels while preserving the metazoan taxon restriction on the parent term.
+
+Changes made:
+- Updated `GO:0045136` label from `development of secondary sexual characteristics, sensu Metazoa` to `development of animal secondary sexual characteristics`
+- Updated `GO:0046543` label from `development of secondary female sexual characteristics, sensu Metazoa` to `development of animal secondary female sexual characteristics`
+- Updated `GO:0046544` label from `development of secondary male sexual characteristics, sensu Metazoa` to `development of animal secondary male sexual characteristics`
+- Updated child `is_a` comments to reflect the renamed parent label
+- Updated the label column for `GO:0045136` in `src/taxon_constraints/only_in_taxon.tsv`
+
+Rationale:
+- This follows the curator request in the issue thread and is more consistent with existing GO lexical precedent such as `animal organ development` versus `plant organ development`.
+- The `only_in_taxon Metazoa` restriction remains on `GO:0045136`, so the biological scope established in the previous change is preserved.
+- The existing EXACT synonyms with the unsuffixed names were retained for discoverability and backward-friendly search behavior.
+
+Validation:
+- Pre-validation: `make travis_build` passed before edits
+- Post-edit validation: `make travis_build` passed after edits
+
+Checklist:
+- [x] PLAN: issue and comment thread reviewed; final requested action was clear
+- [x] PRE-VALIDATION: ontology validated before edits
+- [x] RESEARCH: not needed beyond curator discussion already captured in the issue
+- [x] TERM-SEARCH: affected GO terms and taxon constraint entry reviewed
+- [x] DESIGN-PATTERNS: checked naming precedent; no logical-definition changes needed
+- [x] EDITS: used `obo-checkout.pl` / `obo-checkin.pl` workflow for edited terms
+- [x] RELATIONSHIPS: no relationship changes required beyond preserving existing scope
+- [x] SPECIALIZED-EDITS: taxon-constraint guidance consulted; no new TC logic introduced
+- [x] METADATA: existing metadata retained; no new term metadata required
+- [x] AUTOMATED-VALIDATION: `make travis_build` passed
+- [x] REFERENCE-VALIDATION: no new references introduced
+- [x] ISSUE-ALIGNMENT: change matches the latest curator direction in the issue thread
+
+---
+🤖 **Generated by opencode agent**
+- Runtime: `opencode`
+- Model: `openai/gpt-5.4`
+- Agent config: `ai4curation/go-ontology-agent-config@v9:.`
+- Iteration: `1`
+- Run: [View workflow run](https://github.com/ai4curation/eval-ont-agent-go/actions/runs/25979822693)