Missing parent: GO:0070971 endoplasmic reticulum exit site

[dragon-ai-agent]

Shadow ticket of geneontology/go-ontology#31284

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• GO term ID and label for which you request a new superclass

GO:0070971 endoplasmic reticulum exit site
Cellular Component
Definition (GO:0070971 GONUTS page)
An endoplasmic reticulum part at which COPII-coated vesicles are produced. PMID:15623529 PMID:16957052

• New superclass (parent) suggested

GO:0005789 endoplasmic reticulum membrane

• Reference(s), if appropriate

Also improve the definition

An endoplasmic reticulum membrane subdomain at which COPII-coated vesicles are produced.

and add exact synonym ERES

.

[cmungall]

@dragon-ai-agent please analyze and implement

[dragon-ai-agent]

🤖 Working on it...

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— @dragon-ai-agent

[dragon-ai-agent]

Implementation Complete ✅

I've created PR #17 with the requested changes to GO:0070971 (endoplasmic reticulum exit site):

Changes Made:

1. Added new parent: is_a: GO:0005789 ! endoplasmic reticulum membrane
2. Updated definition: Changed from "An endoplasmic reticulum part" to "An endoplasmic reticulum membrane subdomain"
3. Added synonym: synonym: "ERES" EXACT []

Before → After:

-def: "An endoplasmic reticulum part at which COPII-coated vesicles are produced."
+def: "An endoplasmic reticulum membrane subdomain at which COPII-coated vesicles are produced."

+synonym: "ERES" EXACT []

-is_a: GO:0110165 ! cellular anatomical structure
+is_a: GO:0005789 ! endoplasmic reticulum membrane

PR: #17

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🤖 Generated by @dragon-ai-agent

• Model: claude-opus-4-5-20251101
• Agent harness: claude-code
• Triggered by: @cmungall
• Run: View workflow run

[cmungall]

@dragon-ai-agent please do this again. I closed the first PR as it was accidentally using old agent instructions

[dragon-ai-agent]

🤖 Working on it...

Follow along: View workflow run

— @dragon-ai-agent

[dragon-ai-agent]

Implementation Complete

I've created PR #26 with the requested changes to GO:0070971 (endoplasmic reticulum exit site).

Changes Made:

1. Updated definition: "An endoplasmic reticulum membrane subdomain at which COPII-coated vesicles are produced."
2. Added logical definition following the membrane region design pattern:
   • intersection_of: GO:0016020 ! membrane
   • intersection_of: part_of GO:0005789 ! endoplasmic reticulum membrane
3. Added exact synonym: "ERES"
4. Added term_tracker_item linking to the original issue

Design Pattern Applied

The membrane region pattern (as used by GO:0098590 plasma membrane region) properly classifies ERES as a specialized membrane subdomain of the ER membrane, rather than a generic cellular anatomical structure. The is_a: GO:0005789 relationship will be inferred from the logical definition.

Validation

All SPARQL QC checks and reasoning validation passed via make travis_build.

PR: #26

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🤖 Generated by @dragon-ai-agent

• Model: claude-opus-4-5-20251101
• Agent harness: claude-code
• Triggered by: @cmungall
• Run: View workflow run