Fixing claude code permissions.

Fixes ai4curation/aidocs#39

Author: cmungall

copier.yaml

@@ -31,7 +31,7 @@ project_slug:
     {% endif %}
 
 github_handle:
-  help: github username of the author. Will be assigned as a-controller
+  help: github username of the author. Will be assigned as ai-controller
   type: str
   default: "cmungall"
 

template/.claude/settings.json

@@ -0,0 +1,14 @@
+{
+  "permissions": {
+    "allow": [
+        "Bash(*)",
+        "Edit",
+        "MultiEdit",
+        "NotebookEdit",
+        "FileEdit",
+        "WebFetch",
+        "WebSearch",
+        "Write"
+    ]
+  }
+}

template/.github/workflows/dragon-ai.yml

@@ -182,7 +182,7 @@ jobs:
 
           # Run Claude with proper permissions
           claude -p "$(cat /tmp/claude-input/claude_prompt.txt)" \
+            --permission-mode bypassPermissions \
             --output-format stream-json \
-            --allowedTools "Bash(git:*)" "Bash(gh:*)" "FileSystem(*)" \
             --verbose