Question regarding imsig() output

[nadia35]

Hello!

I was able to successfully run ImSig on a set of transcriptomes and am now interpreting the results (the output for the imsig() function). How were the scores for each gene signature calculated? Scores across samples ranged from 0.2 to 100 in one signature and 900 - 3,000 in another. I assume that this is different from the r score?

Thank you very much!

[imcoleman]

I am having the same issue. I was expecting the cell proportion and not sure how to interpret these scores. Looking at the output plots it appears to be the average expression.