how to make fig.1g

[BenxiaHu]

Hi,
I just check out your great work entiltled "Somatic mutation distributions in cancer genomes vary with three-dimensional chromatin structure".
Would you like to explain how you analyze the fig.1g?
Best,

[akdemirlab]

Hi,
Would you like to learn about fig 1a or 1g?
For 1a, you can use MutationAggregate.py file, for 1g, I'd need to upload a code for generating the random sites.

[BenxiaHu]

sorry.
I would like to learn about Fig.1.g.

[akdemirlab]

Sure. I will share a code soon.
Briefly, I shuffle genomic regions with pybedtools and plot the observed vs expected numbers.