cleanup info files

- fix citation links in README
- removed remaining vestige of versioneer from MANIFEST.in
- cleaned up minor issues in CITATION.cff

Author: orbeckst

CITATION.cff

@@ -218,7 +218,7 @@ preferred-citation:
       affiliation: Arizona State University
       orcid: 'https://orcid.org/0000-0003-1340-0831'
   type: 'article'
-  year: 2024
+  year: '2024'
   journal: 'Journal of Open Source Software'
   doi: '10.21105/joss.06934'
   pages: '6934'
@@ -241,7 +241,7 @@ references:
       - family-names: Chodera
         given-names: John D.
     type: 'article'
-    pages: '1799–1805'
+    pages: '1799-1805'
     year: '2016'
     journal: 'Journal of Chemical Theory and Computation'
     doi: '10.1021/acs.jctc.5b00784'

MANIFEST.in

@@ -2,5 +2,4 @@ include *.rst
 recursive-include src/alchemlyb *.gz *.bz2 *.zip *.rst *.txt
 include README.md
 include LICENSE
-include versioneer.py
 include src/alchemlyb/_version.py

README.md

@@ -60,6 +60,6 @@ We also welcome code contributions: have a look at our [Developer Guide](https:/
 
 ## References
 
-- <a name="shirts2008">Shirts, M.R.</a>, and Chodera, J.D. (2008). Statistically optimal analysis of samples from multiple equilibrium states. The Journal of Chemical Physics 129, 124105.
-- <a name="chodera2016">Chodera, J.D</a>. (2016). A Simple Method for Automated Equilibration Detection in Molecular Simulations. Journal of Chemical Theory and Computation 12, 1799–1805.
-- <a name="wu2024">Wu, Z.</a>, Dotson, D. L., Alibay, I., Allen, B. K., Barhaghi, M. S., Hénin, J., Joseph, T. T., Kenney, I. M., Lee, H., Li, H., Lim, V., Liu, S., Marson, D., Merz, P. T., Schlaich, A., Mobley, D., Shirts, M. R., Beckstein, O. (2024). **alchemlyb: the simple alchemistry library.** *Journal of Open Source Software*, **9** (101), 6934. [https://doi.org/10.21105/joss.06934](https://doi.org/10.21105/joss.06934)
+- <a id="shirts2008">Shirts, M.R.</a>, and Chodera, J.D. (2008). Statistically optimal analysis of samples from multiple equilibrium states. The Journal of Chemical Physics 129, 124105.
+- <a id="chodera2016">Chodera, J.D</a>. (2016). A Simple Method for Automated Equilibration Detection in Molecular Simulations. Journal of Chemical Theory and Computation 12, 1799–1805.
+- <a id="wu2024">Wu, Z.</a>, Dotson, D. L., Alibay, I., Allen, B. K., Barhaghi, M. S., Hénin, J., Joseph, T. T., Kenney, I. M., Lee, H., Li, H., Lim, V., Liu, S., Marson, D., Merz, P. T., Schlaich, A., Mobley, D., Shirts, M. R., Beckstein, O. (2024). **alchemlyb: the simple alchemistry library.** *Journal of Open Source Software*, **9** (101), 6934. [https://doi.org/10.21105/joss.06934](https://doi.org/10.21105/joss.06934)