triku/pyproject.toml at master · alexmascension/triku · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
# pyproject.toml

[build-system]
requires = ["setuptools>=42", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "triku"
version = "2.2.0"
description = "Feature selection method for Single Cell data."
readme = "README.md"
requires-python = ">=3.8"
license = { text = "BSD" }

authors = [{ name = "Alex M. Ascensión", email = "alexmascension@gmail.com" }]

classifiers = [
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "Natural Language :: English",
    "Operating System :: MacOS :: MacOS X",
    "Operating System :: POSIX :: Linux",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.7",
    "Programming Language :: Python :: 3.8",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]

dependencies = [
    "scipy",
    "numpy",
    "pandas",
    "scanpy",
    "cython",
    "tqdm",
    "bottleneck",
]

[project.urls]
repository = "https://gitlab.com/alexmascension/triku"

# --- Setuptools specific configuration ---
[tool.setuptools]

#SOURCE: https://stackoverflow.com/a/76739181
[tool.setuptools.packages.find]
where = ["."] # list of folders that contain the packages (["."] by default)
include = [
    "triku", "triku.tl", "triku.utils",
] # package names should match these glob patterns (["*"] by default)
exclude = [] # exclude packages matching these glob patterns (empty by default)
namespaces = false # to disable scanning PEP 420 namespaces (true by default)

[tool.ruff]
# Exclude a variety of commonly ignored directories.
exclude = [
    ".bzr",
    ".direnv",
    ".eggs",
    ".git",
    ".git-rewrite",
    ".hg",
    ".mypy_cache",
    ".nox",
    ".pants.d",
    ".pytype",
    ".ruff_cache",
    ".svn",
    ".tox",
    ".venv",
    "__pypackages__",
    "_build",
    "buck-out",
    "build",
    "dist",
    "node_modules",
    "venv",
]

# Same as Black.
line-length = 79

# Assume Python 3.12.
target-version = "py312"

[tool.ruff.lint]
# Enable Pyflakes (`F`) and a subset of the pycodestyle (`E`)  codes by default.
select = ["E4", "E7", "E9", "F"]
extend-select = ["I"]
ignore = []

# Allow fix for all enabled rules (when `--fix`) is provided.
fixable = ["ALL"]
unfixable = []

# Allow unused variables when underscore-prefixed.
dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$"

[tool.ruff.format]
# Like Black, use double quotes for strings.
quote-style = "double"

# Like Black, indent with spaces, rather than tabs.
indent-style = "space"

# Like Black, respect magic trailing commas.
skip-magic-trailing-comma = true

# Like Black, automatically detect the appropriate line ending.
line-ending = "auto"