S2APLER/pyproject.toml at main · allenai/S2APLER · GitHub

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[project]
name = "s2apler"
version = "0.2.6"
description = "S2APLER: Semantic Scholar (S2) Agglomeration of Papers with Low Error Rate"
readme = "README.md"
requires-python = ">=3.8"
license = { text = "Apache-2.0" }
authors = [
    { name = "Allen Institute for Artificial Intelligence" }
]
keywords = ["clustering", "papers", "semantic-scholar", "machine-learning"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: Apache Software License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Topic :: Scientific/Engineering :: Artificial Intelligence",
]

dependencies = [
    "numpy>=1.23.4,<2",
    "scikit-learn>=1.1.3",
    "text-unidecode==1.3",
    "requests==2.28.1",
    "hyperopt==0.2.7",
    "pandas==1.5.1",
    "lightgbm>=3.3.5",
    "fastcluster==1.2.6",
    "shap==0.41.0",
    "matplotlib>=3.6.2",
    "seaborn==0.12.1",
    "tqdm==4.64.1",
    "jellyfish==0.9.0",
    "pylatexenc==2.10",
    "awscli>=1.27.12",
]

[project.optional-dependencies]
dev = [
    "pytest==7.2.0",
    "pytest-cov==4.0.0",
    "flake8==5.0.4",
    "black==22.10",
    "click==8.0.4",
    "mypy==0.991",
    "pydantic==1.10.2",
]

[project.urls]
Homepage = "https://github.com/allenai/S2APLER"
Repository = "https://github.com/allenai/S2APLER"
Issues = "https://github.com/allenai/S2APLER/issues"

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[tool.hatch.build.targets.wheel]
packages = ["s2apler"]

[tool.uv]
dev-dependencies = [
    "pytest==7.2.0",
    "pytest-cov==4.0.0",
    "flake8==5.0.4",
    "black==22.10",
    "click==8.0.4",
    "mypy==0.991",
    "pydantic==1.10.2",
]

[tool.black]
line-length = 120
target-version = ["py38"]
include = '\.pyi?$'

[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = "test_*.py"
python_classes = "Test*"
python_functions = "test_*"
addopts = "-v --cov=s2apler --cov-report=term-missing"

[tool.mypy]
python_version = "3.8"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = false
ignore_missing_imports = true

[tool.coverage.run]
source = ["s2apler"]
omit = ["*/tests/*", "*/test_*.py"]

[tool.coverage.report]
exclude_lines = [
    "pragma: no cover",
    "def __repr__",
    "raise AssertionError",
    "raise NotImplementedError",
    "if __name__ == .__main__.:",
    "if TYPE_CHECKING:",
]