constexpr: nucToIdx, getIndexFromNucleotide, constants #4
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build & Test | |
| on: | |
| push: | |
| branches: [main] | |
| paths-ignore: ['docs/**', '*.md'] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04, macos-latest] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install dependencies (Ubuntu) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y build-essential cmake git wget \ | |
| protobuf-compiler libprotobuf-dev \ | |
| libboost-program-options-dev libboost-iostreams-dev \ | |
| libboost-filesystem-dev libboost-system-dev libboost-date-time-dev \ | |
| zlib1g-dev capnproto libcapnp-dev libhts-dev \ | |
| autoconf automake libtool libeigen3-dev | |
| - name: Install dependencies (macOS) | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install cmake boost protobuf capnp htslib eigen autoconf automake libtool | |
| - name: Configure | |
| run: cmake -S . -B build -DCMAKE_BUILD_TYPE=Release | |
| - name: Build | |
| run: cmake --build build -j$(nproc 2>/dev/null || sysctl -n hw.ncpu) | |
| - name: Integration tests | |
| run: ctest --test-dir build -R integration --output-on-failure |