From 90b9e3c544455b99ba9fcc5aead932539023da30 Mon Sep 17 00:00:00 2001
From: Ryan Lim <rlim@chanzuckerberg.com>
Date: Thu, 1 Jul 2021 18:35:16 -0400
Subject: [PATCH] initialize primer values

---
 src/primer_bed.cpp | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/src/primer_bed.cpp b/src/primer_bed.cpp
index 9fa99867..c194d96a 100644
--- a/src/primer_bed.cpp
+++ b/src/primer_bed.cpp
@@ -96,6 +96,9 @@ std::vector<primer> populate_from_file(std::string path, int32_t offset = 0){
     int ctr = 0;
     primer p;
     p.set_strand(0);		// Set strand to NULL
+    p.set_start(0);		// Initialize primer variables
+    p.set_end(0);
+    p.set_score(-1); 
     while(std::getline(lineStream,cell,'\t')){
       switch(ctr){
       case 0:
@@ -287,4 +290,4 @@ primer get_min_start(std::vector<primer> primers){
 primer get_max_end(std::vector<primer> primers){
   auto minmax_start = std::minmax_element(primers.begin(), primers.end(), [] (primer lhs, primer rhs) {return lhs.get_end() < rhs.get_end();});
   return *(minmax_start.second);
-}
\ No newline at end of file
+}