garnish.affinity (v2.3.1) outputs only "NA" in the columns "affinity(nM)_netMHC" and "%Rank_netMHC" when with "HLA-B*55:01"

[Xiao-Zhong]

Hi Andrew,

Another issue I recently encountered is as posted. Could you help take a look?

An input CSV file is as:
"sample_id","pep_mut","mutant_index","MHC"
"fusions.pass.head100","NTDNTLGTEIAIEWQAHVC","all","HLA-A26:01"
"fusions.pass.head100","ETGALKTFITQQGPNLNHQNRIPTPIPNFVLVLTTSRMCSIKCFYNI","all","HLA-B55:01"

garnish.affinity output is in the attached.

output.csv

To confirm it's an issue of garnish.affinity, I ran NetMHCpan web for these seqs. As shown, both sequences has these values, shown in the attached screenshots.

Thanks a lot!

Xiao