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Issues list

Surface more customization options for bulk expression heatmaps in pixie enhancement New feature or request
#1189 opened Mar 13, 2025 by givison
1
ark-analysis/utils module Pythonic upgrade #1185 enhancement New feature or request
#1188 opened Mar 12, 2025 by alex-l-kong
@srivarra
ark-analysis/segmentation module Pythonic upgrade #1185 enhancement New feature or request
#1187 opened Mar 12, 2025 by alex-l-kong
@srivarra
ark-analysis/phenotyping module Pythonic upgrade #1185 enhancement New feature or request
#1186 opened Mar 12, 2025 by alex-l-kong
@alex-l-kong
ark-analysis/analysis module Pythonic upgrade enhancement New feature or request
#1185 opened Mar 12, 2025 by alex-l-kong
@alex-l-kong
Functional markers enhancement New feature or request
#1170 opened Oct 21, 2024 by smith6jt-cop
3
Update scikit-image / Fiber Segmentation dependencies Pull requests that update a dependency file enhancement New feature or request
#1162 opened Oct 4, 2024 by srivarra v0.8.0 Release
AnnData spatial analysis 1 enhancement New feature or request
#1112 opened Jan 25, 2024 by camisowers • Draft
2 of 3 tasks
1
@camisowers
2
Look into Napari functionality enhancement New feature or request
#1072 opened Oct 3, 2023 by ngreenwald
@srivarra
Downstream analysis planning design_doc Detailed implementation plan enhancement New feature or request
#1071 opened Sep 29, 2023 by ngreenwald
generic cell cluster notebook for nimbus enhancement New feature or request
#1068 opened Sep 28, 2023 by HPiyadasa
3
Filter FOVs in calc_distance_matrix enhancement New feature or request
#1056 opened Sep 5, 2023 by srivarra
Updating deepcell_visualization files after filtering for too small/too big cells from the cell table enhancement New feature or request
#1039 opened Aug 18, 2023 by TerGla
4
Adding cropping utility notebook for Pixie enhancement New feature or request
#1038 opened Aug 11, 2023 by cliu72
2
Local Deepcell or Cellpose server for larger tile segmentation enhancement New feature or request
#1035 opened Aug 8, 2023 by jamesMo84
2
Make file path selection more interactive enhancement New feature or request
#1029 opened Jul 28, 2023 by alex-l-kong
1
@alex-l-kong
Add Pixie notebook tests that account for non-linear workflows enhancement New feature or request
#995 opened May 16, 2023 by alex-l-kong
Remove extraneous misc_utils.verify_in_list and misc_utils.verify_same_elements tests enhancement New feature or request
#861 opened Dec 14, 2022 by alex-l-kong
Default plotting settings for all plots enhancement New feature or request good first issue Good for newcomers
#206 opened Aug 28, 2020 by ngreenwald
@camisowers
1
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