You can process the data by:
bash preprocess.sh # for BioGPT
or:
bash preprocess_large.sh # for BioGPT-Large
You can fine-tune on the pre-trained models by:
bash train.sh # for BioGPT
or
bash train_large.sh # for BioGPT-Large
We provide our fine-tuned model on the task. See here
You can inference and evaluate the model on the test set by:
bash infer.sh # for BioGPT
or
bash infer_large.sh # for BioGPT-Large