Merge pull request #279 from EliasH-E/docsEdit

Added docs for DataNodes.h and WorldSetup.cc, changed comments in SymWorld.h to avoid DoxyGen

Author: anyaevostinar

docs/conf.py

@@ -50,7 +50,7 @@
 breathe_default_project = "Symbulation"
 
 breathe_projects_source = {
-    "auto" : ( "../source", ["default_mode/Host.h", "default_mode/Symbiont.h","default_mode/SymWorld.h","efficient_mode/EfficientHost.h"
+    "auto" : ( "../source", ["default_mode/Host.h", "default_mode/Symbiont.h","default_mode/SymWorld.h","default_mode/DataNodes.h","default_mode/WorldSetup.cc","efficient_mode/EfficientHost.h"
     ,"efficient_mode/EfficientSymbiont.h","efficient_mode/EfficientWorld.h","lysis_mode/Bacterium.h","lysis_mode/Phage.h","lysis_mode/LysisWorld.h",
     "pgg_mode/PGGHost.h","pgg_mode/PGGSymbiont.h","pgg_mode/PGGWorld.h","SymAnimate.h"] )
 }

source/default_mode/SymWorld.h

@@ -609,9 +609,7 @@ class SymWorld : public emp::World<Organism>{
   }
 
 
-  /**
-   * Definitions of data node functions, expanded in DataNodes.h
-   */
+  //Definitions of data node functions, expanded in DataNodes.h
   virtual void CreateDataFiles();
   void MapPhylogenyInteractions();
   void WritePhylogenyFile(const std::string & filename);
@@ -662,9 +660,7 @@ class SymWorld : public emp::World<Organism>{
   emp::DataMonitor<double,emp::data::Histogram>& GetWithinHostVarianceDataNode();
 
 
-  /**
-   * Definitions of setup functions, expanded in WorldSetup.cc
-   */
+  //Definitions of setup functions, expanded in WorldSetup.cc
   virtual void Setup();
   virtual void SetupHosts(long unsigned int* POP_SIZE);
   virtual void SetupSymbionts(long unsigned int* total_syms);