Merge pull request #119 from aodn/PackagesUpdate

Packages update

Author: lbesnard

environment.yml

@@ -12,6 +12,7 @@ dependencies:
   - h5py
   - scipy
   - pip<24.1
+  - virtualenv==20.28.1 # https://github.com/python-poetry/poetry/issues/10056#issuecomment-2594269592
   - pip:
-    - poetry==2.0.1
-    - -r requirements.txt
+      - poetry==2.0.1
+      - -r requirements.txt

poetry.lock

@@ -11,13 +11,13 @@ license = "GNU General Public License v3.0"
 readme = "README.md"
 keywords = ["cloud", "data", "NetCDF", "CSV", "Zarr", "Parquet"]
 classifiers = [
-    "Development Status :: 3 - Alpha",
-    "Intended Audience :: Developers",
-    "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
-    "Programming Language :: Python :: 3",
-    "Programming Language :: Python :: 3.10",
-    "Programming Language :: Python :: 3.11",
-    "Topic :: Software Development :: Libraries :: Python Modules",
+  "Development Status :: 3 - Alpha",
+  "Intended Audience :: Developers",
+  "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
+  "Programming Language :: Python :: 3",
+  "Programming Language :: Python :: 3.10",
+  "Programming Language :: Python :: 3.11",
+  "Topic :: Software Development :: Libraries :: Python Modules",
 ]
 
 
@@ -27,12 +27,12 @@ classifiers = [
 
 [tool.poetry.dependencies]
 python = ">=3.10, <4.0"
-netCDF4 = "==1.6.5"  # hardpinned because of bug https://github.com/Unidata/netcdf4-python/issues/1342
-numpy = "<2.0.0"  # new version created issue similar to https://github.com/Sinaptik-AI/pandas-ai/issues/1251 only visible when opening with xarray some NetCDF. but not visible with dask although empty data NaN is created
+netCDF4 = "==1.6.5"                                        # hardpinned because of bug https://github.com/Unidata/netcdf4-python/issues/1342
+numpy = "<2.0.0"                                           # new version created issue similar to https://github.com/Sinaptik-AI/pandas-ai/issues/1251 only visible when opening with xarray some NetCDF. but not visible with dask although empty data NaN is created
 pandas = ">=2.2.3"
 python-dateutil = ">=2.9.0"
 jsonschema = ">=4.22.0"
-h5py = "==3.11.0"  # libmamba cant install 3.12.1 on coiled!
+h5py = "==3.11.0"                                          # libmamba cant install 3.12.1 on coiled!
 h5netcdf = ">=1.3.0"
 scipy = ">=1.13.0"
 boto3 = ">=1.34.162"
@@ -41,12 +41,12 @@ rechunker = ">=0.5.2"
 s3fs = ">=2024.9.0"
 shapely = ">=2.0.4"
 xarray = { version = "==2024.9.0", extras = ["complete"] }
-zarr = ">=2.18.3"
+zarr = "==2.18.3"
 geopandas = ">=0.14.4"
 coiled = ">=1.53.0"
 dask-cloudprovider = ">=2024.9.1"
 dask = ">=2024.9.1"
-dask-expr = ">=1.1.15"  # needs to be added for coiled otherwise an old version is used and not updated
+dask-expr = ">=1.1.15"                                     # needs to be added for coiled otherwise an old version is used and not updated
 colorama = ">=0.4.6"
 s3path = ">=0.5.7"
 python-levenshtein = "^0.25.1"
@@ -58,11 +58,16 @@ ipdb = "^0.13"
 ipython = "^7.5.3"
 coverage = "^7.5.3"
 pre-commit = "^4.0.1"
-moto = {version = ">=5.0.0", extras = ["ec2", "s3",  "server", "all"]}  # Add Moto with optional dependencies
+moto = { version = ">=5.0.0", extras = [
+  "ec2",
+  "s3",
+  "server",
+  "all",
+] } # Add Moto with optional dependencies
 fuzzywuzzy = ">=0.18.0"
 sphinx = ">=7.3.7"
 poetry-pre-commit-plugin = ">=0.2.1"
-asciinema = ">=2.4.0"  # to record terminal sessions, useful for documentation
+asciinema = ">=2.4.0" # to record terminal sessions, useful for documentation
 matplotlib = "^3.9.1"
 cartopy = ">=0.23.0"
 termcolor = "^2.4.0"
@@ -72,7 +77,6 @@ seaborn = ">=0.13.2"
 windrose = ">=1.9.2"
 
 
-
 #[tool.poetry.extras]
 #testing = ["pytest", "ipython", "ipdb"]
 #interactive = ["pytest", "ipython", "ipdb"]
@@ -142,7 +146,6 @@ generic_cloud_optimised_creation = "aodn_cloud_optimised.bin.generic_cloud_optim
 #data = ["aodn_cloud_optimised/config/*.json", "aodn_cloud_optimised/config/dataset/*.json"]
 
 
-
 [tool.pre_commit]
 version = "2.3.0"
 config = ".pre-commit-config.yaml"