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Merged
merged 10 commits into from
Oct 28, 2025
Merged

first draft of EmberProjectPage.vue for kumar2025 #64

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780bd3d
first draft of EmberProjectPage.vue for kumar2025
sandyhider Sep 29, 2025
9b863c2
removed pip install reference
sandyhider Sep 30, 2025
53f8fb2
removed q-layout
sandyhider Oct 21, 2025
c87914e
added a space in EMBER Archive
sandyhider Oct 23, 2025
7884303
updated the DOI so it uses our Ember Archive DOI for this project
sandyhider Oct 28, 2025
58b8bb6
Merge branch 'main' into 62-create-page-for-kumar-jax-lab-ember-project
sandyhider Oct 28, 2025
8a3c2f0
ran yarn run format
sandyhider Oct 28, 2025
205e4ce
Merge branch '62-create-page-for-kumar-jax-lab-ember-project' of http…
sandyhider Oct 28, 2025
19cca7b
added change to README after running, yarn run format
sandyhider Oct 28, 2025
4287494
updated the icon in the top left to have the initials of the most rig…
sandyhider Oct 28, 2025
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255 changes: 255 additions & 0 deletions frontend/src/pages/EmberProjectPage.vue
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<template>

<q-page padding>
<!-- Hero / Title -->
<div class="q-mb-lg">
<div class="text-overline text-grey-7">EMBER Archive Project</div>
<div class="row items-center no-wrap q-col-gutter-md">
<div class="col-auto">
<q-avatar square size="64px" color="primary" text-color="white">EA</q-avatar>
</div>
<div class="col">
<h1 class="text-h4 q-my-none">{{ project.title }}</h1>
<div class="text-subtitle2 text-grey-7 q-mt-xs">
{{ project.authors }}
<span v-if="project.year">&nbsp;•&nbsp;{{ project.year }}</span>
</div>
<div class="q-mt-xs">
<q-chip
v-for="tag in project.tags"
:key="tag"
dense
square
color="grey-3"
text-color="grey-9"
class="q-mr-sm"
>{{ tag }}</q-chip
>
</div>
</div>
</div>
</div>

<!-- Body layout -->
<div class="row q-col-gutter-xl">
<!-- Main column -->
<div class="col-12 col-md-8">
<!-- Summary / Abstract -->
<q-card class="q-mb-lg" flat bordered>
<q-card-section>
<div class="text-h6">Summary</div>
<div class="text-body1 q-mt-sm">{{ project.summary }}</div>
</q-card-section>
<q-separator />
<q-card-section>
<div class="text-subtitle1 q-mb-sm">How to access the data (Python)</div>
<q-banner rounded class="bg-grey-2 text-grey-9 q-mb-md">
Install aws cli if not installed.
<q-card flat bordered class="code-card">
<q-card-section>
<pre class="language-python"><code>{{ pythonSnippet }}</code></pre>
</q-card-section>
</q-card>
</q-banner>
</q-card-section>
</q-card>

<!-- Publications / Citations -->
<q-card class="q-mb-lg" flat bordered>
<q-card-section>
<div class="text-h6">Citation</div>
<div class="text-body2 q-mt-sm">If you use this dataset, please cite:
Kumar et al. 2025 [Data set]. EMBER Archive. https://doi.org/10.60533/EMBER-2025-K2N5
</div>
<q-list separator class="q-mt-sm">
<q-item v-for="pub in project.publications" :key="pub.title">
<q-item-section>
<div class="text-body1">{{ pub.title }}</div>
<div class="text-caption text-grey-7">{{ pub.authors }} ({{ pub.year }})</div>
<div class="q-mt-xs">
<q-btn
v-if="pub.doi"
flat
dense
icon="bookmark"
:label="pub.doi"
:href="pub.doiUrl"
target="_blank"
/>
<q-btn
v-if="pub.link"
flat
dense
icon="launch"
label="Open"
:href="pub.link"
target="_blank"
/>
</div>
</q-item-section>
</q-item>
</q-list>
</q-card-section>
</q-card>

<!-- Additional details accordion -->
<q-card class="q-mb-xl" flat bordered>
<q-expansion-item
expand-separator
icon="info"
label="Additional Details"
caption="Acquisition, voxel sizes, acknowledgements, and more"
default-opened
>
<q-card>
<q-card-section>
<div class="row q-col-gutter-md">
<div class="col-12 col-sm-6">
<div class="text-subtitle2 text-grey-7">Acquisition</div>
<div class="text-body2">{{ project.acquisition }}</div>
</div>
<div class="col-12 col-sm-6">
<div class="text-subtitle2 text-grey-7">Acknowledgements</div>
<div class="text-body2">{{ project.acknowledgements }}</div>
</div>
</div>
</q-card-section>
</q-card>
</q-expansion-item>
</q-card>
</div>

<!-- Sidebar -->
<div class="col-12 col-md-4">
<q-card class="q-mb-lg" flat bordered>
<q-card-section>
<div class="text-subtitle1">Links</div>
<div class="q-gutter-sm q-mt-sm">
<q-btn
outline
color="primary"
icon="table_view"
label="View at EMBERArchive.org"
:href="project.links.console"
target="_blank"
class="full-width"
/>
<q-btn
outline
color="primary"
icon="code"
label="API Docs"
:href="project.links.api"
target="_blank"
class="full-width"
/>
<q-btn
outline
color="secondary"
icon="link"
label="Project Page"
:href="project.links.project"
target="_blank"
class="full-width"
/>
</div>
</q-card-section>
</q-card>

<q-card class="q-mb-lg" flat bordered>
<q-card-section>
<div class="text-subtitle1">Dataset Metadata</div>
<q-list dense class="q-mt-sm">
<q-item v-for="(val, key) in project.metadata" :key="key">
<q-item-section>
<div class="text-caption text-grey-7">{{ key }}</div>
<div class="text-body2">{{ val }}</div>
</q-item-section>
</q-item>
</q-list>
</q-card-section>
</q-card>

<q-card flat bordered>
<q-card-section>
<div class="text-subtitle1">EMBERarchive URI</div>
<q-banner rounded class="bg-grey-2 text-grey-9 q-mt-sm">
<code class="break-all">{{ project.uri }}</code>
</q-banner>
<q-btn
class="q-mt-sm"
dense
outline
icon="content_copy"
label="Copy URI"
@click="copy(project.uri)"
/>
</q-card-section>
</q-card>
</div>
</div>
</q-page>
</template>

<script lang="ts" setup>
// import { ref } from 'vue';
import { useQuasar } from 'quasar';

const $q = useQuasar();

// const leftDrawerOpen = ref(false);

const project = {
title: 'Visual detection of seizures in mice using supervised machine learning',
authors: 'Gautam S. Sabnis, Leinani Hession, J. Matthew Mahoney, Arie Mobley, Marina Santos, Brian Geuther, and Vivek Kumar',
year: '2025',
tags: ['Seizure', 'Epilepsy', 'Machine Learning', 'Computer Vision', 'High Throughput', 'Supervised Learning', 'Mouse Models', 'Open Field'],
summary:
'Visual detection of seizures in mice using supervised machine learning',
acquisition: 'Data was created using XXXXX; see publication for more details.',
acknowledgements: 'Data hosted by EMBER. Funded in part by the NIH.',
publications: [
{
title: 'Visual detection of seizures in mice using supervised machine learning',
authors: 'Kumar et al. 2025',
year: '2025',
doi: 'doi:10.60533/EMBER-2025-K2N5',
doiUrl: 'https://doi.org/10.60533/EMBER-2025-K2N5',
link: 'https://www.cell.com/cell-reports/home',
},
],
links: {
console: 'https://EMBERarchive.org/',
api: 'https://api-dandi.emberarchive.org/swagger',
project: 'https://emberarchive.org/project/kumar2025',
},
metadata: {
Modality: 'Electrophysiology',
Species: 'Mouse',
License: 'CC BY-NC-SA 4.0 Attribution-NonCommercial-ShareAlike 4.0 International',
Size: '~GB-scale',
},
uri: 'https://ember-open-data.s3.us-east-1.amazonaws.com/other/kumar2025/index.html',
};

const pythonSnippet = `# View contents of kumar2025\naws s3 ls s3://ember-open-data/other/kumar2025/\n\n# Copy specific file or whole directory\naws s3 cp s3://ember-open-data/other/kumar2025/somefile .`;

async function copy(text: string): Promise<void> {
try {
await navigator.clipboard.writeText(text);
$q.notify({ type: 'positive', message: 'Copied!' });
} catch {
$q.notify({ type: 'warning', message: 'Copy failed' });
}
}
</script>

<style scoped>
.code-card pre {
margin: 0;
white-space: pre-wrap;
}
.break-all {
word-break: break-all;
}
</style>
4 changes: 4 additions & 0 deletions frontend/src/router/routes.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -38,6 +38,10 @@ const routes: RouteRecordRaw[] = [
path: 'tos',
component: () => import('pages/TermsOfService.vue'),
},
{
path: '/project/kumar2025',
component: () => import('pages/EmberProjectPage.vue'),
},
],
},
// Always leave this as last one,
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