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The ignoreDifferences and RespectIgnoreDifferences prevent argocd from syncing unchanged resources but it won't help if resource is not permitted in a project (this check is executed first). I think you won't have to use config management tool settings to exclude resources. If you are using helm then you might use skipCrds: true:

spec:
  source:
    # helm specific config
    helm:
      skipCrds: true

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@roc26002w
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