cell-state-engineering/.env.example at main · arnavbathla/cell-state-engineering · GitHub

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# ─── Database ────────────────────────────────────────────────────────────────
POSTGRES_HOST=postgres
POSTGRES_PORT=5432
POSTGRES_DB=cell_state_compiler
POSTGRES_USER=cellcompiler
POSTGRES_PASSWORD=cellcompiler
DATABASE_URL=postgresql+psycopg2://cellcompiler:cellcompiler@postgres:5432/cell_state_compiler

# ─── Redis ───────────────────────────────────────────────────────────────────
REDIS_URL=redis://redis:6379/0

# ─── JWT ─────────────────────────────────────────────────────────────────────
JWT_SECRET=dev_change_me_in_production_use_32_char_minimum_xx
JWT_ALGORITHM=HS256
ACCESS_TOKEN_EXPIRE_MINUTES=1440

# ─── CORS / API ──────────────────────────────────────────────────────────────
CORS_ORIGINS=http://localhost:3000
NEXT_PUBLIC_API_BASE_URL=http://localhost:8000/api/v1

# ─── Genome Model Service ────────────────────────────────────────────────────
GENOME_MODEL_SERVICE_URL=http://genome-model-service:8100

# ─── Evo 2 Configuration ─────────────────────────────────────────────────────
# Provider: local | nvidia_nim
EVO2_PROVIDER=local
# Model sizes:
#   evo2_1b_base  — CPU-compatible, dev/test (~2 GB)
#   evo2_7b       — Single A100/H100 40GB+
#   evo2_40b      — Multi-GPU, 2× H100 80GB required (use docker-compose.gpu.yml)
EVO2_MODEL_NAME=evo2_1b_base
EVO2_MODEL_VERSION=
# Device: cpu | cuda:0
EVO2_DEVICE=cpu
EVO2_MAX_CONTEXT_LENGTH=8192
EVO2_DEFAULT_EMBEDDING_LAYER=
EVO2_HEALTH_RUN_SMOKE_TEST=true

# ─── HuggingFace ─────────────────────────────────────────────────────────────
# Required to download evo2_40b if the repository is gated.
# Get your token at https://huggingface.co/settings/tokens
HUGGINGFACE_TOKEN=

# ─── Evo 2 Generation Gate ───────────────────────────────────────────────────
# Generation is disabled by default. Set true only in controlled research contexts.
ENABLE_EVO2_GENERATION=false

# ─── Sequence Safety ─────────────────────────────────────────────────────────
ENABLE_REAL_SEQUENCE_STORAGE=false
SEQUENCE_SAFETY_MODE=restricted
MAX_SEQUENCE_LENGTH=8192

# ─── NVIDIA NIM (alternative to local Evo 2) ─────────────────────────────────
NVIDIA_NIM_API_KEY=
NVIDIA_NIM_EVO2_URL=
NVIDIA_NIM_TIMEOUT_SECONDS=120

# ─── Worker ──────────────────────────────────────────────────────────────────
WORKER_CONCURRENCY=2