Author: Arpith C. Jacob, License: GPL
Systolic array to accelerate the Zuker RNA folding algorithm. See:
Rapid RNA Folding: Analysis and Acceleration of the Zuker Recurrence, Arpith Jacob, Jeremy Buhler, and Roger Chamberlain, IEEE Symposium on Field-Programmable Custom Computing Machines, 2010
http://www.cse.wustl.edu/~jarpith/download/dl.cgi?url=fccm10
Note:
- Requires addition of interface code at the top level.
- To compute hairpin loops of size > 255 you must regenerate some tables