Add GitHub Actions R CMD check workflow

Author: asalavaty

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,53 @@
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: R-CMD-check
+
+permissions: read-all
+
+jobs:
+  R-CMD-check:
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+    runs-on: ${{ matrix.config.os }}
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - { os: ubuntu-latest, r: 'release' }
+          - { os: macos-latest, r: 'release' }
+          - { os: windows-latest, r: 'release' }
+          - { os: ubuntu-latest, r: 'devel' }
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+      _R_CHECK_FORCE_SUGGESTS_: false
+      _R_CHECK_CRAN_INCOMING_: false
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: |
+            any::rcmdcheck
+            any::knitr
+            any::rmarkdown
+            bioc::edgeR
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          args: 'c("--no-manual", "--as-cran")'
+          error-on: '"warning"'