ome-help/importing-data-4.html at gh-pages · atarkowska/ome-help · GitHub

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---
layout: default
title: Importing Data with OMERO.insight v. 4.4.11
menu-id: l1-insight
pdfs:
    - importing-data-4.pdf
---
<p>Using the OMERO.insight to import image data onto the OMERO server.</p>

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<ol class="step">

<li><p class="first">Select <span class="bold">Import</span> from the <span class="bold">File</span> menu;</p>

<p>or click on the Import icon in the toolbar;</p>

<p>or select a destination Project or Dataset for the imported data and right click then select <span class="bold">Import</span>.</p>

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<img alt="{{ site.baseurl }}/images/importingDataManager.jpg" class="align-center" src="{{ site.baseurl }}/images/importingDataManager.jpg" style="width: 100%;" />

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</li>

<li><p class="first">Use the <span class="bold">File Finder</span> to locate data to be imported on local or networked drives.</p>

<p>Select files for importing and click the top arrow to add them to the import queue.</p>

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<img alt="{{ site.baseurl }}/images/importingDataImporter.jpg" class="align-center" src="{{ site.baseurl }}/images/importingDataImporter.jpg" style="width: 100%;" />

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</li>

<li><p class="first">Use the <span class="bold">Location Selection</span> window to determine the destination of the imported data.</p>

<p>Choose an existing project or dataset using the drop-down menus;</p>

<p>or click <span class="bold">New</span> to create a new project or dataset;</p>

<p>When import location has been set, click <span class="bold">Add to the Queue</span>.</p>

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<img alt="{{ site.baseurl }}/images/importingDataProjectDataset.jpg" class="align-center" src="{{ site.baseurl }}/images/importingDataProjectDataset.jpg" style="width: 100%;" />

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</li>

<li><p class="first">When ready, click <span class="bold">Import</span> to start importing queued data.</p>

<p>The progress of imports is shown in the <span class="bold">Import</span> tab.</p>

<p>A green tick indicates when the queue is successfully imported.</p>

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<img alt="{{ site.baseurl }}/images/importingDataStart.jpg" class="align-center" src="{{ site.baseurl }}/images/importingDataStart.jpg" style="width: 100%;" />

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</li>

<li><p class="first">Mouse-over the thumbnails of successfully imported images to see a preview.</p>

<p>Click on the link to the dataset or close the Import window to view the data in the <span class="bold">Data Manager</span>.</p>

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<img alt="{{ site.baseurl }}/images/importingDataEnd.jpg" class="align-center" src="{{ site.baseurl }}/images/importingDataEnd.jpg" style="width: 82%;" />

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</li>
</ol>

<div class="section" id="importing-options">

<h2>Importing Options</h2>

<p>The following points illustrate how to set some of the options that can be used when importing.</p>

<p><span class="bold">Archiving data</span></p>

<ol class="step">

<li><p class="first">To archive data files in their original format on the OMERO server click the <span class="bold">Archive</span> checkbox.</p>

<p>Individual data files can be selected or deselected using the checkboxes in the column below.</p>

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<img alt="{{ site.baseurl }}/images/importingDataArchive.jpg" class="align-center" src="{{ site.baseurl }}/images/importingDataArchive.jpg" style="width: 100%;" />

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<div class="note">
<p class="note-title">Note</p>
<p class="note-text">Archiving at import enables subsequent retrieval of the file in the original format at a later date, in addition to the ability to export it as an OME-TIFF.</p>
</div>

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</li>
</ol>

<p><span class="bold">Adding tags at import</span></p>

<ol class="step">

<li><p class="first">Click the Options tab then <span class="bold">Add Tags</span> to batch-add tags to the data as it is imported.</p>

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<img alt="{{ site.baseurl }}/images/importingDataAddTag1.jpg" class="align-center" src="{{ site.baseurl }}/images/importingDataAddTag1.jpg" style="width: 100%;" />

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</li>

<li><p class="first">Select an existing tag in the left hand pane and click the right arrow;</p>

<p>or enter the name of a new tag and click <span class="bold">Add</span>.</p>

<p>Click <span class="bold">Save</span> to add these tags to the data at import.</p>

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<img alt="{{ site.baseurl }}/images/importingDataAddTag2.jpg" class="align-center" src="{{ site.baseurl }}/images/importingDataAddTag2.jpg" style="width: 75%;" />

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</li>

<li><p class="first">After saving, added tags can be seen in the <span class="bold">Options</span> tab and can be removed by clicking the <span class="bold">-</span> button.</p>

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<img alt="{{ site.baseurl }}/images/importingDataRemoveTag.jpg" class="align-center" src="{{ site.baseurl }}/images/importingDataRemoveTag.jpg" style="width: 75%;" />

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</li>
</ol>

<p><span class="bold">Selecting group for import</span></p>

<p>If you are a member of more than one group, use the <span class="bold">Group</span> drop down box to select which group to import the data into.</p>

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<img alt="{{ site.baseurl }}/images/importingDataSelectGroup.jpg" class="align-center" src="{{ site.baseurl }}/images/importingDataSelectGroup.jpg" style="width: 100%;" />

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<p><span class="bold">Toggle between project and screen</span></p>

<p>Click the <span class="bold">Project - Screen</span> tabs to change between image and screen data.</p>

<p>The File Finder window changes to reflect available file types, according to the selection.</p>

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<img src="{{ site.baseurl }}/images/importingDataProjectScreen.jpg" alt="{{ site.baseurl }}/images/importingDataProjectScreen.jpg" height="238" class="align-center" style="width: 100%;" />

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<p><span class="bold">Import for Another User</span></p>

<p>If you are an Administrator user, use the <span class="bold">Import For</span> drop down box to select another user to import the data as.</p>

<p>The chosen user will then own this data.</p>

<p>The projects and datasets shown in the drop-down boxes as available to import into, is determined by the permission status of the group.</p>

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<img alt="{{ site.baseurl }}/images/importingDataImportFor.jpg" class="align-center" src="{{ site.baseurl }}/images/importingDataImportFor.jpg" style="width: 100%;" />

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<div class="page-end">
	<p>All Tutorial Material is available on line at: <a href="http://help.openmicroscopy.org">www.help.openmicroscopy.org</a></p>
	<p>The Main OME website is at: <a href="http://www.openmicroscopy.org">www.openmicroscopy.org</a></p>
</div> <!-- end page-end -->


</div><!-- end section -->