aws-healthomics-mcp-server: workflow-creation-from-git #1668
Description
Describe the feature
A new feature is available in HealthOmics - Users can now directly pull workflow definitions, parameter templates, and README files from their Git repositories into AWS HealthOmics, eliminating the need for manual transfers or intermediate steps. This feature is not available through MCP.
Use Case
As a user, I would like to be able to provide a pointer to the source control repository location. (e.g. nf-core/demo). the createWorkflow should then be able to
1/look for the repo location and validate we can access it
2/Create the workflow
2.1/by prompting the user to provide the location of README.md file of interpreting the location from Git
2.2/ask if the parameters need to be infered, manually entered, or ask for workflow_parameters.json (default infer from git)
2.3/use dynamic storage as default storage
2.4/create the workflow
2.5/provide status of the create
Proposed Solution
Update the create_workflow method in workflow_management.py to accommodate the location of workflow source code availability.
Other Information
No response
Acknowledgements
- I may be able to implement this feature request
- This feature might incur a breaking change