diff --git a/datasets/humancellatlas.yaml b/datasets/humancellatlas.yaml new file mode 100644 index 000000000..d1d9ec5d7 --- /dev/null +++ b/datasets/humancellatlas.yaml @@ -0,0 +1,98 @@ +Name: Human Cell Atlas + +Description: "The Human Cell Atlas (HCA) is a collaborative community of + international scientists. Our mission is to create comprehensive reference + maps of all the cells in the human body as a basis for both understanding + human health and diagnosing, monitoring, and treating disease. The HCA + registry has more than one thousand member scientists from hundreds of + institutions around the world. The project is steered and governed by an + Organizing Committee, co-chaired by Aviv Regev and Sarah Teichmann." + +Documentation: https://data.humancellatlas.org/ + +Contact: https://data.humancellatlas.org/contact + +ManagedBy: UC Santa Cruz Genomics Institute, University of California, Santa Cruz (UCSC) + +UpdateFrequency: Monthly + +Tags: + - life sciences + - biology + - cell biology + - genome + - genomic + - transcriptomics + - gene expression + - single-cell transcriptomics + - cell imaging + - Homo sapiens + - Mus musculus + +License: https://data.humancellatlas.org/about/data-use-agreement + +Citation: "The URL for the HCA Data Portal, https://data.humancellatlas.org, can + be used as the citation for data obtained from the HCA. Alternatively, you can + cite: Regev A., et al. 2017. The Human Cell Atlas. Elife. Dec 5;6. pii: + e27041. doi: 10.7554/eLife.27041." + +Resources: + - Description: "An S3 bucket containing all publicly accessible data files in + the Human Cell Atlas. The bucket layout and access procedures are + documented at + + https://github.com/DataBiosphere/azul/blob/develop/docs/mirror.rst + + and metadata can be viewed at + + https://explore.data.humancellatlas.org/ + + or accessed programmatically at + + https://service.azul.data.humancellatlas.org/" + ARN: arn:aws:s3:::humancellatlas + Region: us-east-1 + Type: S3 Bucket + Explore: + - "[Data Browser UI](https://explore.data.humancellatlas.org/)" + - "[Azul REST Web Service](https://service.azul.data.humancellatlas.org/)" + +DataAtWork: + Publications: + - Title: "The Human Cell Atlas White Paper" + URL: https://arxiv.org/abs/1810.05192 + AuthorName: "Aviv Regev, Sarah Teichmann, Orit Rozenblatt-Rosen, Michael + Stubbington, Kristin Ardlie, Ido Amit, Paola Arlotta, Gary Bader, + Christophe Benoist, Moshe Biton, Bernd Bodenmiller, Benoit Bruneau, + Peter Campbell, Mary Carmichael, Piero Carninci, Leslie Castelo-Soccio, + Menna Clatworthy, Hans Clevers, Christian Conrad, Roland Eils, Jeremy + Freeman, Lars Fugger, Berthold Goettgens, Daniel Graham, Anna Greka, Nir + Hacohen, Muzlifah Haniffa, Ingo Helbig, Robert Heuckeroth, Sekar + Kathiresan, Seung Kim, Allon Klein, Bartha Knoppers, Arnold Kriegstein, + Eric Lander, Jane Lee, Ed Lein, Sten Linnarsson, Evan Macosko, Sonya + MacParland, Robert Majovski, Partha Majumder, John Marioni, Ian + McGilvray, Miriam Merad, Musa Mhlanga, Shalin Naik, Martijn Nawijn, + Garry Nolan, Benedict Paten, Dana Pe'er, Anthony Philippakis, Chris + Ponting, Steve Quake, Jayaraj Rajagopal, Nikolaus Rajewsky, Wolf Reik, + Jennifer Rood, Kourosh Saeb-Parsy, Herbert Schiller, Steve Scott, Alex + Shalek, Ehud Shapiro, Jay Shin, Kenneth Skeldon, Michael Stratton, Jenna + Streicher, Henk Stunnenberg, Kai Tan, Deanne Taylor, Adrian Thorogood, + Ludovic Vallier, Alexander van Oudenaarden, Fiona Watt, Wilko Weicher, + Jonathan Weissman, Andrew Wells, Barbara Wold, Ramnik Xavier, Xiaowei + Zhuang, Human Cell Atlas Organizing Committee" + - Title: "The network effect: studying COVID-19 pathology with the Human Cell Atlas" + URL: https://www.nature.com/articles/s41580-020-0267-3 + AuthorName: "Sarah Teichmann, Aviv Regev" + - Title: "The Human Cell Atlas from a cell census to a unified foundation model" + URL: https://www.nature.com/articles/s41586-024-08338-4 + AuthorName: "Jennifer E. Rood, Samantha Wynne, Lucia Robson, Anna + Hupalowska, John Randell, Sarah A. Teichmann & Aviv Regev" + - Title: "The Human Cell Atlas: towards a first draft atlas" + URL: https://www.nature.com/collections/jccbbdahji + AuthorName: "Various authors" + - Title: "The Human Cell Atlas: towards a first draft atlas" + URL: https://www.nature.com/immersive/d42859-024-00060-5/index.html + AuthorName: "Various authors" + +ADXCategories: + - Healthcare & Life Sciences Data \ No newline at end of file