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Multi-kilosort kilosort chanmap #16

@ryanharvey1

Description

@ryanharvey1

When multi-kilosort option iterates over shanks/probes, the previous chanMap from kilosort is used instead of generating a new one.

The first shank/probe will be correct, but subsequent chanMaps may be incorrect.

%% Creates a channel map file
if ~exist(fullfile(basepath,'chanMap.mat'),'file')
disp('Creating ChannelMapFile')
createChannelMapFile_KSW(basepath,basename,'staggered',rejectChannels);
else
disp('Loading ChannelMapFile')
load(fullfile(basepath,'chanMap.mat'));
end

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