ran spotlessApply

Author: Alice Fu

src/arcade/potts/agent/module/PottsModuleFlyStemProliferation.java

@@ -48,10 +48,16 @@ public class PottsModuleFlyStemProliferation extends PottsModuleProliferationVol
     /** Rate of Deadpan change (ticks^-1). */
     final double deadpanRate;
 
-    /** Percent threshold of apical voxels considered when dividing Deadpan at cell division. The sum of apicalThreshold and basalThreshold should not exceed 1. */
+    /**
+     * Percent threshold of apical voxels considered when dividing Deadpan at cell division. The sum
+     * of apicalThreshold and basalThreshold should not exceed 1.
+     */
     final double apicalThreshold;
 
-    /** Percent threshold of basal voxels considered when dividing Prospero at cell division. The sum of apicalThreshold and basalThreshold should not exceed 1. */
+    /**
+     * Percent threshold of basal voxels considered when dividing Prospero at cell division. The sum
+     * of apicalThreshold and basalThreshold should not exceed 1.
+     */
     final double basalThreshold;
 
     /** Threshold ratio of Prospero to Deadpan in daughter cell to determine cell identity. */
@@ -163,7 +169,8 @@ public PottsModuleFlyStemProliferation(PottsCellFlyStem cell) {
         }
 
         if (apicalThreshold + basalThreshold > 1 || apicalThreshold < 0 || basalThreshold < 0) {
-            throw new InvalidParameterException("Apical and basal thresholds should be nonnegative and not overlap (check that apicalThreshold + basalThreshold <= 1)");
+            throw new InvalidParameterException(
+                    "Apical and basal thresholds should be nonnegative and not overlap (check that apicalThreshold + basalThreshold <= 1)");
         }
 
         volumeBasedCriticalVolumeMultiplier =

src/arcade/potts/util/PottsUtilities.java

@@ -1,11 +1,10 @@
 package arcade.potts.util;
 
-import arcade.potts.env.location.PottsLocation;
-import arcade.potts.env.location.Voxel;
+import java.util.ArrayList;
 import sim.util.Bag;
 import ec.util.MersenneTwisterFast;
-
-import java.util.ArrayList;
+import arcade.potts.env.location.PottsLocation;
+import arcade.potts.env.location.Voxel;
 
 /** Utility class providing static helper methods for Potts simulations. */
 public final class PottsUtilities {
@@ -29,7 +28,6 @@ public static void splitBagDupesRandomly(
         }
     }
 
-
     /**
      * Calculates the fraction of voxels in a daughter cell to distribute transcription factors.
      * Returns 0 if the voxels Bag is empty.

test/arcade/potts/util/PottsUtilitiesTest.java

@@ -1,15 +1,10 @@
 package arcade.potts.util;
 
-import ec.util.MersenneTwisterFast;
-import org.junit.jupiter.api.Test;
-import sim.util.Bag;
-import arcade.patch.agent.cell.PatchCell;
-import arcade.patch.agent.cell.PatchCellTissue;
-import arcade.patch.env.location.PatchLocation;
-
 import java.util.ArrayList;
 import java.util.List;
-
+import org.junit.jupiter.api.Test;
+import sim.util.Bag;
+import ec.util.MersenneTwisterFast;
 import static org.junit.jupiter.api.Assertions.*;
 import static org.mockito.Mockito.*;
 
@@ -21,7 +16,8 @@ public void constructor_called_throwsException() {
     }
 
     @Test
-    public void splitBagDupesRandomly_allDuplicatesallRandomFalse_firstBagEmptiedSecondBagUnchanged() {
+    public void
+            splitBagDupesRandomly_allDuplicatesallRandomFalse_firstBagEmptiedSecondBagUnchanged() {
         Bag firstBag = new Bag();
         Bag secondBag = new Bag();
         Object a = new Object();
@@ -95,7 +91,8 @@ public void splitBagDupesRandomly_someDuplicates_mixedRandomOutcomes() { // path
     }
 
     @Test
-    public void splitBagDupesRandomly_someDuplicatesallRandomTrue_itemsRemovedFromSecondBagFirstBagUnchanged() {
+    public void
+            splitBagDupesRandomly_someDuplicatesallRandomTrue_itemsRemovedFromSecondBagFirstBagUnchanged() {
         Bag firstBag = new Bag();
         Bag secondBag = new Bag();
         Object a = new Object();