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33 lines (30 loc) · 876 Bytes
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outpath: output/
gurobi:
license: ~/gurobi.lic
timeout: 1
samples:
S1:
ref: Homo_sapiens_chr21
bc_wl: 10x
reads: output/simulate/TS/S1.fastq
truth: output/simulate/TS/S1.tsv
E1:
ref: Homo_sapiens
bc_wl: 10x
reads: output/simulate/TS/E1.fastq
truth: output/simulate/TS/E1.tsv
# N1:
# ref: Homo_sapiens
# reads: data/samples/N1.fastq
# truth: output/simulate/TS/S1.tsv
refs:
Homo_sapiens:
GTF : data/refs/homo_sapiens.annot.gtf
DNA : data/refs/homo_sapiens.dna.fa
cDNA : data/refs/homo_sapiens.cdna.fa
Homo_sapiens_chr21:
GTF: data/refs/homo_sapiens.chr21.annot.gtf
DNA: data/refs/homo_sapiens.chr21.dna.fa
cDNA: data/refs/homo_sapiens.chr21.cdna.fa
barcodes:
10x: data/refs/3M-february-2018.txt.gz