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Welcome to the OSTIR Documentation!

OSTIR is a Python package for predicting the rates at which ribosomes will bind to and initiate translation from different start codons in bacterial mRNAs. The code builds on the last open source version of the RBS calculator.

Background

Explains the thermodynamic model and shows typical results for E. coli genes.

Installation

Methods that are available for installing OSTIR and its dependencies.

Command Line Usage

How to run OSTIR at the command line with an explanation of input and output file formats.

Python Module Usage

How to call OSTIR as a Python function with an explanation of parameters and return values.

Developer Information

How you can contribute to improving OSTIR.