Merge pull request #104 from bcbio/fix_compareversions_ALB

Fix compareVersions alb

Author: lpantano

inst/templates/methylation/QC/QC.Rmd

@@ -27,7 +27,7 @@ setwd(fs::path_dir(getSourceEditorContext()$path))
 #.      other versions
 stopifnot(R.version$major>= 4) # requires R4
 if (compareVersion(R.version$minor,"3.1")<0) warning("We recommend >= R4.3.1") 
-stopifnot(compareVersion(BiocManager::version(), "3.18")>=0)
+stopifnot(compareVersion(as.character(BiocManager::version()), "3.18")>=0)
 ```
 
 This code is in this ![](https://img.shields.io/badge/status-draft-grey) revision.

inst/templates/multiomics/teaseq/QC/QC.Rmd

@@ -77,8 +77,8 @@ setwd(fs::path_dir(getSourceEditorContext()$path))
 # NOTE: This code will check version, this is our recommendation, it may work
 #.      other versions
 stopifnot(R.version$major>= 4) # requires R4
-stopifnot(compareVersion(R.version$minor,"3.3")==0) # requires >=4.3.3
-stopifnot(compareVersion(BiocManager::version(), "3.18")>=0)
+stopifnot(compareVersion(R.version$minor,"3.3")>=0) # requires >=4.3.3
+stopifnot(compareVersion(as.character(BiocManager::version()), "3.18")>=0)
 ```
 
 This code is in this ![](https://img.shields.io/badge/status-draft-grey) revision.

inst/templates/singlecell/scripts/seurat_init.R

@@ -4,9 +4,9 @@ setwd(fs::path_dir(getSourceEditorContext()$path))
 # NOTE: This code will check version, this is our recommendation, it may work
 #.      other versions
 stopifnot(R.version$major>= 4) # requires R4
-stopifnot(compareVersion(R.version$minor,"3.3")==0) # requires >=4.3.3
-stopifnot(compareVersion(BiocManager::version(), "3.18")>=0)
-stopifnot(compareVersion(package.version("Seurat"), "5.0.0")>=0)
+stopifnot(compareVersion(R.version$minor,"3.3")>=0) # requires >=4.3.3
+stopifnot(compareVersion(as.character(BiocManager::version()), "3.18")>=0)
+stopifnot(compareVersion(as.character(packageVersion("Seurat")), "5.0.0")>=0)
 
 library(Seurat)
 library(data.table)

inst/templates/singlecell_delux/CellToCell/cellchat.Rmd

@@ -29,7 +29,7 @@ setwd(fs::path_dir(getSourceEditorContext()$path))
 # NOTE: This code will check version, this is our recommendation, it may work
 #.      other versions
 stopifnot(R.version$major>= 4) # requires R4
-stopifnot(compareVersion(R.version$minor,"3.3")==0) # requires >=4.3.3
+stopifnot(compareVersion(R.version$minor,"3.3")>=0) # requires >=4.3.3
 stopifnot(compareVersion(as.character(BiocManager::version()), "3.18")>=0)
 stopifnot(compareVersion(as.character(packageVersion("Seurat")), "5.0.0")>=0)
 ```

inst/templates/spatial/cosmx/01_quality_assessment/QC.Rmd

@@ -32,8 +32,8 @@ setwd(fs::path_dir(getSourceEditorContext()$path))
 #.      other versions
 stopifnot(R.version$major>= 4) # requires R4
 if (compareVersion(R.version$minor,"3.1")<0) warning("We recommend >= R4.3.1") 
-stopifnot(compareVersion(BiocManager::version(), "3.18")>=0)
-stopifnot(compareVersion(package.version("Seurat"), "5.0.0")>=0)
+stopifnot(compareVersion(as.character(BiocManager::version()), "3.18")>=0)
+stopifnot(compareVersion(as.character(packageVersion("Seurat")), "5.0.0")>=0)
 ```
 
 This code is in this ![](https://img.shields.io/badge/status-draft-grey) revision.

inst/templates/spatial/visium/01_quality_assessment/qc.Rmd

@@ -28,8 +28,8 @@ setwd(fs::path_dir(getSourceEditorContext()$path))
 #.      other versions
 stopifnot(R.version$major>= 4) # requires R4
 if (compareVersion(R.version$minor,"3.1")<0) warning("We recommend >= R4.3.1") 
-stopifnot(compareVersion(BiocManager::version(), "3.18")>=0)
-stopifnot(compareVersion(package.version("Seurat"), "5.0.0")>=0)
+stopifnot(compareVersion(as.character(BiocManager::version()), "3.18")>=0)
+stopifnot(compareVersion(as.character(packageVersion("Seurat")), "5.0.0")>=0)
 ```
 
 This code is in this ![](https://img.shields.io/badge/status-draft-grey) revision.