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All provenance traces and generated files
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‎examples/heudiconv/dataset_description.json‎

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{
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"Acknowledgements": "TODO: whom you want to acknowledge",
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"Authors": [
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"TODO:",
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"First1 Last1",
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"First2 Last2",
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"..."
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],
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"BIDSVersion": "1.8.0",
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"DatasetDOI": "TODO: eventually a DOI for the dataset",
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"Funding": [
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"TODO",
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"GRANT #1",
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"GRANT #2"
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],
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"HowToAcknowledge": "TODO: describe how to acknowledge -- either cite a corresponding paper, or just in acknowledgement section",
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"License": "TODO: choose a license, e.g. PDDL (http://opendatacommons.org/licenses/pddl/)",
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"Name": "TODO: name of the dataset",
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"ReferencesAndLinks": [
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"TODO",
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"List of papers or websites"
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]
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}

‎examples/heudiconv/participants.json‎

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{
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"participant_id": {
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"Description": "Participant identifier"
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},
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"age": {
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"Description": "Age in years (TODO - verify) as in the initial session, might not be correct for other sessions"
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},
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"sex": {
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"Description": "self-rated by participant, M for male/F for female (TODO: verify)"
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},
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"group": {
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"Description": "(TODO: adjust - by default everyone is in control group)"
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}
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}

‎examples/heudiconv/prov/prov-heudiconv_act.prov.json‎

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{
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"bids::prov/conversion-00f3a18f": {
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"Label": "Conversion",
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"Command": "heudiconv --files sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms/*.dcm -o . -f sourcedata/hirni-demo/code/hirni-toolbox/converters/heudiconv/hirni_heuristic.py -s 01 -ss acq1 -c dcm2niix -b --minmeta --overwrite",
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"AssociatedWith": "bids::prov/heudiconv-a9x5yd3j",
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"Used": [
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"bids::prov/fedora-1cu6r6ou",
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"bids::sourcedata/hirni-demo/acq1/studyspec.json",
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"bids::sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms",
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"bids::sourcedata/hirni-demo/code/hirni-toolbox/converters/heudiconv/hirni_heuristic.py"
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]
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},
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"bids::prov/conversion-5a66f5be": {
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"Label": "Conversion",
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"Command": "heudiconv --files sourcedata/hirni-demo/acq2/dicoms/example-dicom-functional-master/dicoms/* -o . -f sourcedata/hirni-demo/code/hirni-toolbox/converters/heudiconv/hirni_heuristic.py -s 01 -ss acq2 -c dcm2niix -b --minmeta --overwrite",
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"AssociatedWith": "bids::prov/heudiconv-a9x5yd3j",
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"Used": [
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"bids::prov/fedora-pgrzf567",
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"bids::sourcedata/hirni-demo/acq2/studyspec.json",
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"bids::sourcedata/hirni-demo/acq2/dicoms/example-dicom-functional-master/dicoms",
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"bids::sourcedata/hirni-demo/code/hirni-toolbox/converters/heudiconv/hirni_heuristic.py"
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]
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}
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}

‎examples/heudiconv/prov/prov-heudiconv_base.prov.json‎

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{
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"@context": "https://purl.org/nidash/bidsprov/context.json",
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"BIDSProvVersion": "0.0.1"
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}

‎examples/heudiconv/prov/prov-heudiconv_ent.prov.json‎

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{
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"bids::sourcedata/hirni-demo/code/hirni-toolbox/converters/heudiconv/hirni_heuristic.py": {
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"Label": "heuristic"
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},
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"bids::sourcedata/hirni-demo/acq1/studyspec.json": {
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"Label": "studyspec"
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},
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"bids::sourcedata/hirni-demo/acq2/studyspec.json": {
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"Label": "studyspec"
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},
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"bids::sourcedata/hirni-demo/acq1/dicoms/example-dicom-structural-master/dicoms": {
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"Label": "dicoms"
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},
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"bids::sourcedata/hirni-demo/acq2/dicoms/example-dicom-functional-master/dicoms": {
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"Label": "dicoms"
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},
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"bids::CHANGES": {
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"Label": "CHANGES",
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"GeneratedBy": [
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"bids::prov/conversion-00f3a18f",
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"bids::prov/conversion-5a66f5be"
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]
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},
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"bids::README": {
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"Label": "README",
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"GeneratedBy": [
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"bids::prov/conversion-00f3a18f",
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"bids::prov/conversion-5a66f5be"
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]
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},
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"bids::dataset_description.json": {
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"Label": "dataset_description.json",
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"GeneratedBy": [
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"bids::prov/conversion-00f3a18f",
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"bids::prov/conversion-5a66f5be"
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]
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},
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"bids::participants.json": {
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"Label": "participants.json",
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"GeneratedBy": [
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"bids::prov/conversion-00f3a18f",
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"bids::prov/conversion-5a66f5be"
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]
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},
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"bids::participants.tsv": {
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"Label": "participants.tsv",
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"GeneratedBy": [
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"bids::prov/conversion-00f3a18f",
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"bids::prov/conversion-5a66f5be"
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]
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},
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"bids::scans.json": {
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"Label": "scans.json",
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"GeneratedBy": [
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"bids::prov/conversion-00f3a18f",
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"bids::prov/conversion-5a66f5be"
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]
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},
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"bids::task-oneback_bold.json": {
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"Label": "task-oneback_bold.json",
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"GeneratedBy": [
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"bids::prov/conversion-00f3a18f",
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"bids::prov/conversion-5a66f5be"
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]
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}
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}

‎examples/heudiconv/prov/prov-heudiconv_env.prov.json‎

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{
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"bids::prov/fedora-1cu6r6ou": {
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"Label": "Fedora release 36 (Thirty Six)",
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"OperatingSystem": "GNU/Linux 6.2.15-100.fc36.x86_64",
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"EnvVars": {
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"HIRNI_STUDY_SPEC": "sourcedata/hirni-demo/acq1/studyspec.json"
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}
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},
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"bids::prov/fedora-pgrzf567": {
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"Label": "Fedora release 36 (Thirty Six)",
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"OperatingSystem": "GNU/Linux 6.2.15-100.fc36.x86_64",
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"EnvVars": {
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"HIRNI_STUDY_SPEC": "sourcedata/hirni-demo/acq2/studyspec.json"
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}
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}
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}

‎examples/heudiconv/prov/prov-heudiconv_soft.prov.json‎

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{
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"bids::prov/heudiconv-a9x5yd3j": {
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"Label": "Heudiconv",
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"Version": "v1.3.2"
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}
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}

‎examples/heudiconv/scans.json‎

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{
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"filename": {
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"Description": "Name of the nifti file"
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},
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"acq_time": {
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"LongName": "Acquisition time",
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"Description": "Acquisition time of the particular scan"
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},
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"operator": {
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"Description": "Name of the operator"
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},
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"randstr": {
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"LongName": "Random string",
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"Description": "md5 hash of UIDs"
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}
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}

‎examples/heudiconv/sub-None/anat/sub-None_run-1_T1w.json‎

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{
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"AcquisitionNumber": 1,
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"AcquisitionTime": "13:25:18.000000",
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"ConversionSoftware": "dcm2niix",
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"ConversionSoftwareVersion": "v1.0.20220720",
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"HeudiconvVersion": "1.3.2",
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"ImageOrientationPatientDICOM": [0.999032, -0.0217884, 0.0382096, 0.0265195, 0.991414, -0.128044],
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"ImageType": [
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"DERIVED",
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"SECONDARY"
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],
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"ManufacturersModelName": "nifti2dicom",
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"Modality": "MR",
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"ProtocolName": "anat-T1w",
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"RawImage": false,
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"SeriesDescription": "anat-T1w",
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"SeriesNumber": 401,
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"SliceThickness": 0.666667,
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"SoftwareVersions": "0.4.11",
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"SpacingBetweenSlices": 0.666667}

‎examples/heudiconv/sub-None/anat/sub-None_run-1_T1w.nii.gz‎

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