Using bids::prov/ IRIs for software

Author: bclenet

examples/fmriprep/derivatives/fmriprep/prov/merged/prov-fmriprep.prov.jsonld

@@ -19,29 +19,29 @@
         "Version": "2.2.0",
         "AltIdentifier": "RRID:SCR_004757",
         "prov:actedOnBehalfOf": "bids::prov/nipype-s9w94f9u",
-        "Id": "urn:ants-bagzrxi0"
+        "Id": "bids::prov/ants-bagzrxi0"
       },
       {
         "Label": "FreeSurfer",
         "Version": "6.0.1",
         "AltIdentifier": "RRID:SCR_001847",
         "prov:actedOnBehalfOf": "bids::prov/nipype-s9w94f9u",
-        "Id": "urn:freesurfer-bqv4h9k2"
+        "Id": "bids::prov/freesurfer-bqv4h9k2"
       },
       {
         "Label": "FSL",
         "Version": "5.0.9",
         "AltIdentifier": "RRID:SCR_002823",
         "prov:actedOnBehalfOf": "bids::prov/nipype-s9w94f9u",
-        "Id": "urn:fsl-e1oq534p"
+        "Id": "bids::prov/fsl-e1oq534p"
       }
     ],
     "Activities": [
       {
         "Label": "Correction for intensity non-uniformity (INU)",
         "Command": "N4BiasFieldCorrection",
         "AssociatedWith": [
-          "urn:ants-bagzrxi0"
+          "bids::prov/ants-bagzrxi0"
         ],
         "Used": [
           {
@@ -56,7 +56,7 @@
         "Label": "Skull stripping",
         "Command": "antsBrainExtraction.sh",
         "AssociatedWith": [
-          "urn:ants-bagzrxi0"
+          "bids::prov/ants-bagzrxi0"
         ],
         "Used": [
           "https://github.com/brainspaces/OASIS/blob/master/OASIS-2x2x2.nii.gz",
@@ -68,7 +68,7 @@
         "Label": "Brain surface reconstruction",
         "Command": "recon-all",
         "AssociatedWith": [
-          "urn:freesurfer-bqv4h9k2"
+          "bids::prov/freesurfer-bqv4h9k2"
         ],
         "Used": [],
         "Id": "bids::prov/brain-surface-reconstruction-uac8ysmu"
@@ -77,7 +77,7 @@
         "Label": "Spatial normalization to the ICBM 152",
         "Command": "antsRegistration",
         "AssociatedWith": [
-          "urn:ants-bagzrxi0"
+          "bids::prov/ants-bagzrxi0"
         ],
         "Used": [
           "http://www.bic.mni.mcgill.ca/~vfonov/icbm/2009/mni_icbm152_nlin_sym_09c_nifti.zip",
@@ -94,7 +94,7 @@
         "Label": "Brain tissue segmentation",
         "Command": "feat",
         "AssociatedWith": [
-          "urn:fsl-e1oq534p"
+          "bids::prov/fsl-e1oq534p"
         ],
         "Used": [],
         "Id": "bids::prov/brain-segmentation-egbeiwg9"
@@ -103,7 +103,7 @@
         "Label": "Generation of reference volume",
         "Command": "",
         "AssociatedWith": [
-          "urn:fmriprep-ughfyb4k"
+          "bids::prov/fmriprep-ughfyb4k"
         ],
         "Used": [
           {
@@ -118,7 +118,7 @@
         "Label": "Fielmap Estimation",
         "Command": "epidewarp.fsl",
         "AssociatedWith": [
-          "urn:fsl-e1oq534p"
+          "bids::prov/fsl-e1oq534p"
         ],
         "Used": [
           {
@@ -161,7 +161,7 @@
         "Label": "Estimation of head motion parameters",
         "Command": "mcflirt",
         "AssociatedWith": [
-          "urn:fsl-e1oq534p"
+          "bids::prov/fsl-e1oq534p"
         ],
         "Used": [
           {
@@ -183,7 +183,7 @@
         "Label": "Co-registration",
         "Command": "bbregister",
         "AssociatedWith": [
-          "urn:freesurfer-bqv4h9k2"
+          "bids::prov/freesurfer-bqv4h9k2"
         ],
         "Used": [],
         "Id": "bids::prov/co-registration-f0ataumv"

examples/fmriprep/derivatives/fmriprep/prov/merged/prov-fmriprep.prov.png

@@ -10,19 +10,19 @@
     "AltIdentifier": "RRID:SCR_002502",
     "prov:actedOnBehalfOf": "bids::prov/fmriprep-ughfyb4k"
   },
-  "urn:ants-bagzrxi0": {
+  "bids::prov/ants-bagzrxi0": {
     "Label": "ANTs",
     "Version": "2.2.0",
     "AltIdentifier": "RRID:SCR_004757",
     "prov:actedOnBehalfOf": "bids::prov/nipype-s9w94f9u"
   },
-  "urn:freesurfer-bqv4h9k2": {
+  "bids::prov/freesurfer-bqv4h9k2": {
     "Label": "FreeSurfer",
     "Version": "6.0.1",
     "AltIdentifier": "RRID:SCR_001847",
     "prov:actedOnBehalfOf": "bids::prov/nipype-s9w94f9u"
   },
-  "urn:fsl-e1oq534p": {
+  "bids::prov/fsl-e1oq534p": {
     "Label": "FSL",
     "Version": "5.0.9",
     "AltIdentifier": "RRID:SCR_002823",

examples/fmriprep/derivatives/fmriprep/prov/prov-fmriprep_soft.prov.json

@@ -3,7 +3,7 @@
     "Label": "Correction for intensity non-uniformity (INU)",
     "Command": "N4BiasFieldCorrection",
     "AssociatedWith": [
-      "urn:ants-bagzrxi0"
+      "bids::prov/ants-bagzrxi0"
     ],
     "Used": [      
       {
@@ -17,7 +17,7 @@
     "Label": "Skull stripping",
     "Command": "antsBrainExtraction.sh",
     "AssociatedWith": [
-      "urn:ants-bagzrxi0"
+      "bids::prov/ants-bagzrxi0"
     ],
     "Used": [
       "https://github.com/brainspaces/OASIS/blob/master/OASIS-2x2x2.nii.gz",
@@ -28,7 +28,7 @@
     "Label": "Brain surface reconstruction",
     "Command": "recon-all",
     "AssociatedWith": [
-      "urn:freesurfer-bqv4h9k2"
+      "bids::prov/freesurfer-bqv4h9k2"
     ],
     "Used": [
     ]
@@ -37,7 +37,7 @@
     "Label": "Spatial normalization to the ICBM 152",
     "Command": "antsRegistration",
     "AssociatedWith": [
-      "urn:ants-bagzrxi0"
+      "bids::prov/ants-bagzrxi0"
     ],
     "Used": [
       "http://www.bic.mni.mcgill.ca/~vfonov/icbm/2009/mni_icbm152_nlin_sym_09c_nifti.zip",
@@ -53,7 +53,7 @@
     "Label": "Brain tissue segmentation",
     "Command": "feat",
     "AssociatedWith": [
-      "urn:fsl-e1oq534p"
+      "bids::prov/fsl-e1oq534p"
     ],
     "Used": [
     ]

examples/fmriprep/derivatives/fmriprep/sub-001/anat/sub-001_T1w_prov-fmriprep_act.prov.json

@@ -3,7 +3,7 @@
     "Label": "Generation of reference volume",
     "Command": "",
     "AssociatedWith": [
-      "urn:fmriprep-ughfyb4k"
+      "bids::prov/fmriprep-ughfyb4k"
     ],
     "Used": [
       {
@@ -14,10 +14,10 @@
     ]
   },
   "bids::prov/fieldmap-estimation-gaodue11": {
-    "Label": "Fielmap Estimation",
+    "Label": "Fieldmap Estimation",
     "Command": "epidewarp.fsl",
     "AssociatedWith": [
-      "urn:fsl-e1oq534p"
+      "bids::prov/fsl-e1oq534p"
     ],
     "Used": [
       {
@@ -59,7 +59,7 @@
     "Label": "Estimation of head motion parameters",
     "Command": "mcflirt",
     "AssociatedWith": [
-      "urn:fsl-e1oq534p"
+      "bids::prov/fsl-e1oq534p"
     ],
     "Used": [
       {
@@ -81,7 +81,7 @@
     "Label": "Co-registration",
     "Command": "bbregister",
     "AssociatedWith": [
-      "urn:freesurfer-bqv4h9k2"
+      "bids::prov/freesurfer-bqv4h9k2"
     ],
     "Used": [
     ]