Compliance with BIDS

Author: bclenet

examples/dcm2niix/README.md

@@ -29,11 +29,11 @@ as follows:
 │   ├── prov-dcm2niix_base.prov.json
 │   ├── prov-dcm2niix_env.prov.json
 │   └── prov-dcm2niix_soft.prov.json
-└── sub_02
-    ├── ses_20130717141500
+└── sub-02
+    ├── ses-20130717141500
     │   └── anat
     │       └── sub-02_ses-20130717141500_T1w.json
-    └── ses_20140425155335
+    └── ses-20140425155335
         └── func
             └── sub-02_ses-20140425155335_task-oneback_run-1_bold.json
 ```

examples/dcm2niix/code/merge_prov.py

@@ -17,8 +17,8 @@
 	'prov/prov-dcm2niix_act.prov.json'
 ]
 sidecar_files = [
-	'sub_02/ses_20130717141500/anat/sub-02_ses-20130717141500_T1w.json',
-	'sub_02/ses_20140425155335/func/sub-02_ses-20140425155335_task-oneback_run-1_bold.json'
+	'sub-02/ses-20130717141500/anat/sub-02_ses-20130717141500_T1w.json',
+	'sub-02/ses-20140425155335/func/sub-02_ses-20140425155335_task-oneback_run-1_bold.json'
 ]
 
 # Base jsonld

examples/dcm2niix/prov/merged/prov-dcm2niix.prov.jsonld

@@ -44,11 +44,11 @@
         "Id": "bids::prov/fedora-uldfv058"
       },
       {
-        "Id": "bids::sub_02/ses_20130717141500/anat/sub-02_ses-20130717141500_T1w.nii",
+        "Id": "bids::sub-02/ses-20130717141500/anat/sub-02_ses-20130717141500_T1w.nii",
         "GeneratedBy": "bids::prov/conversion-00f3a18f"
       },
       {
-        "Id": "bids::sub_02/ses_20140425155335/func/sub-02_ses-20140425155335_task-oneback_run-1_bold.nii",
+        "Id": "bids::sub-02/ses-20140425155335/func/sub-02_ses-20140425155335_task-oneback_run-1_bold.nii",
         "GeneratedBy": "bids::prov/conversion-5a66f5be"
       }
     ]