First example for dcm2niix

Author: bclenet

examples/dcm2niix_1/README.md

@@ -1,12 +1,12 @@
 # BIDS Prov example for `dcm2niix`
 
-This example aim at showing provenance traces from a DICOM to Nifti conversion, performed by `dcm2niix` on a Linux-based (Fedora) operating system.
+This example aims at showing provenance traces from a DICOM to Nifti conversion, performed by `dcm2niix` on a Linux-based (Fedora) operating system.
 
 ## Overview
 
-> [!NOTE] We use the single file `prov/dcm2niix.prov.jsonld` to store all provenance traces relative to the conversion steps.
+We use the single file `prov/dcm2niix.prov.jsonld` to store all provenance traces relative to the conversion steps.
 
-After conversion, and adding the provenance traces, the resulting directory tree looks like this:
+After conversion, and adding provenance traces, the resulting directory tree looks like this:
 
 ```
 prov/
@@ -29,7 +29,7 @@ pip install -r ../../requirements.txt
 python ../../bids_prov/visualize.py --input_file prov/dcm2niix.prov.jsonld --output_file prov/dcm2niix.prov.png
 ```
 
-![](/examples/dcm2niix/prov/dcm2niix.prov.png)
+![](/examples/dcm2niix_1/prov/dcm2niix.prov.png)
 
 ## Source dataset
 

examples/dcm2niix_1/sub-02/anat/sub-02_T1w.json

@@ -0,0 +1,24 @@
+{
+    "Modality": "MR",
+    "ManufacturersModelName": "nifti2dicom",
+    "SoftwareVersions": "0.4.11",
+    "SeriesDescription": "anat-T1w",
+    "ProtocolName": "anat-T1w",
+    "ImageType": ["DERIVED", "SECONDARY"],
+    "RawImage": false,
+    "SeriesNumber": 401,
+    "AcquisitionTime": "13:25:18.000000",
+    "AcquisitionNumber": 1,
+    "SliceThickness": 0.666667,
+    "SpacingBetweenSlices": 0.666667,
+    "ImageOrientationPatientDICOM": [
+        0.999032,
+        -0.0217884,
+        0.0382096,
+        0.0265195,
+        0.991414,
+        -0.128044   ],
+    "ConversionSoftware": "dcm2niix",
+    "ConversionSoftwareVersion": "v1.0.20220720",
+    "GeneratedBy": "bids::prov/conversion-00f3a18f"
+}