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Boris Clénet edited this page Nov 14, 2023 · 17 revisions

Work progress status for each pipeline

The status column tells whether the work on the pipeline is :
🔴 not started yet
🟠 in progress
🟢 completed

The main software column gives a simplified version of what can be found in the team descriptions under the general.software column.

The reproducibility column rates the pipeline as follows:

  • default score is ⭐⭐⭐⭐;
  • -1 if the team did not use fmriprep data;
  • -1 if the team used several pieces of software (e.g.: FSL and AFNI);
  • -1 if the team used custom or marginal software (i.e.: something else than SPM, FSL, AFNI or nistats);
  • -1 if the team did not provided his source code.
    | team_id | status | main software | fmriprep used ? | related issues | related pull requests | excluded from NARPS analysis | reproducibility | | --- |:---:| --- | --- | --- | --- | --- | --- | | Q6O0 | :green_circle: | SPM | Yes | | | No | :star::star::star::black_small_square:
    | | 6VV2 | 🟠 | AFNI | No | 126, 36, | 37, | No | ⭐⭐▪️▪️
    | | 08MQ | 🟠 | FSL | No | 120, | 121, | No | ⭐⭐▪️▪️
    | | 1KB2 | 🟠 | FSL | No | 61, 53, 3, | 62, | No | ⭐⭐▪️▪️
    | | 43FJ | 🟠 | FSL | No | 71, 53, 3, | 94, | No | ⭐⭐▪️▪️
    | | 4SZ2 | 🟠 | FSL | Yes | 96, | 99, | Yes | ⭐⭐⭐▪️
    | | 4TQ6 | 🟠 | FSL | Yes | 53, 3, | | Yes | ⭐⭐⭐▪️
    | | B5I6 | 🟠 | FSL | Yes | 95, | 102, | No | ⭐⭐⭐▪️
    | | O6R6 | 🟠 | FSL | Yes | 97, | | No | ⭐⭐⭐▪️
    | | T54A | 🟠 | FSL | Yes | 76, 53, | 77, | No | ⭐⭐⭐▪️
    | | X19V | 🟠 | FSL | Yes | 53, | 93, | No | ⭐⭐⭐▪️
    | | 0ED6 | 🟠 | SPM | No | 51, | 55, | No | ⭐⭐▪️▪️
    | | 0I4U | 🟠 | SPM | No | 53, 3, | | No | ⭐⭐▪️▪️
    | | 3C6G | 🟠 | SPM | No | 105, | 106, | No | ⭐⭐▪️▪️
    | | 98BT | 🟠 | SPM | No | 118, 53, | 119, | Yes | ⭐⭐▪️▪️
    | | UK24 | 🟠 | SPM | No | 60, | | No | ⭐⭐▪️▪️
    | | V55J | 🟠 | SPM | No | 53, | | Yes | ⭐⭐▪️▪️
    | | 2T6S | 🟠 | SPM | Yes | 107, 42, | | No | ⭐⭐⭐▪️
    | | 9T8E | 🟠 | SPM | Yes | 49, | | No | ⭐⭐⭐▪️
    | | C88N | 🟠 | SPM | Yes | 115, 53, | 116, | No | ⭐⭐⭐▪️
    | | J7F9 | 🟠 | SPM | Yes | 79, 53, | 80, | No | ⭐⭐⭐▪️
    | | R9K3 | 🟠 | SPM | Yes | 98, 53, | 78, | No | ⭐⭐⭐▪️
    | | U26C | 🟠 | SPM | Yes | | 21, | No | ⭐⭐⭐⭐
    Link to shared analysis code : https://github.com/gladomat/narps | | VG39 | 🟠 | SPM | Yes | 57, | 59, | Yes | ⭐⭐⭐▪️
    | | 27SS | 🔴 | AFNI | No | | | No | ⭐⭐▪️▪️
    | | I9D6 | 🔴 | AFNI | No, we used AFNI's afni_proc.py tool (in conjunction with other AFNI software and FreeSurfer) to carry out the pre-processing and analysis (mostly) in the same analysis run for each subject. | | | No | ⭐⭐▪️▪️
    | | 80GC | 🔴 | AFNI | Yes | | | No | ⭐⭐⭐▪️
    | | K9P0 | 🔴 | AFNI | Yes | | | No | ⭐⭐⭐▪️
    | | O03M | 🔴 | AFNI | Yes | | | No | ⭐⭐⭐▪️
    | | UI76 | 🔴 | AFNI | Yes | | | No | ⭐⭐⭐▪️
    | | E6R3 | 🔴 | AFNI, other | Yes | | | No | ⭐⭐▪️▪️
    | | 3PQ2 | 🔴 | FSL | No | | | No | ⭐⭐▪️▪️
    | | 9Q6R | 🔴 | FSL | No | | | No | ⭐⭐▪️▪️
    | | C22U | 🔴 | FSL | No | | | No | ⭐▪️▪️▪️
    Custom Matlab script for white matter PCA confounds | | I52Y | 🔴 | FSL | No | | | No | ⭐⭐▪️▪️
    | | L9G5 | 🔴 | FSL | No | | | No | ⭐⭐▪️▪️
    | | P5F3 | 🔴 | FSL | No | | | Yes | ⭐⭐▪️▪️
    | | Q58J | 🔴 | FSL | No | | | Yes | ⭐⭐⭐▪️
    Link to shared analysis code : https://github.com/amrka/NARPS_Q58J | | XU70 | 🔴 | FSL | No | | | No | ⭐▪️▪️▪️
    Uses custom software : FSL + 4drealign | | 51PW | 🔴 | FSL | Yas | | | No | ⭐⭐⭐▪️
    | | 50GV | 🔴 | FSL | Yes | | | No | ⭐⭐⭐▪️
    Uses custom software (Denoiser) | | O21U | 🔴 | FSL | Yes | | | No | ⭐⭐⭐▪️
    | | B23O | 🔴 | FSL | Yes | | | No | ⭐⭐⭐▪️
    | | 0C7Q | 🔴 | FSL, AFNI | Yes | | | Yes | ⭐⭐▪️▪️
    | | I07H | 🔴 | FSL, AFNI | Yes | | | Yes | ⭐⭐▪️▪️
    | | R7D1 | 🔴 | FSL, AFNI | Yes | | | No | ⭐⭐⭐▪️
    Link to shared analysis code : https://github.com/IMTAltiStudiLucca/NARPS_R7D1 | | X1Y5 | 🔴 | FSL, AFNI | Yes | | | No | ⭐⭐▪️▪️
    | | X1Z4 | 🔴 | FSL, HCP Workbench | No | | | Yes | ⭐▪️▪️▪️
    Multiple software dependencies : FSL + fmriprep + ciftify + HCP workbench + Freesurfer + ANTs | | R42Q | 🔴 | FSL, SPM, AFNI, nistats | No | | | No | ⭐⭐▪️▪️
    Uses fMRIflows, a custom software based on NiPype. Code available here : https://github.com/ilkayisik/narps_R42Q | | AO86 | 🔴 | FSL, nistats | Yes | | | No | ⭐⭐▪️▪️
    | | 2T7P | 🔴 | Other | No | | | Yes | ⭐⭐▪️▪️
    Link to shared analysis code : https://osf.io/3b57r | | 0H5E | 🔴 | SPM | No | | | Yes | ⭐⭐▪️▪️
    | | 1P0Y | 🔴 | SPM | No | | | No | ⭐⭐▪️▪️
    | | 6FH5 | 🔴 | SPM | No | | | Yes | ⭐⭐▪️▪️
    | | 94GU | 🔴 | SPM | No | | | No | ⭐▪️▪️▪️
    Multiple software dependencies : SPM + ART + TAPAS + Matlab. | | L1A8 | 🔴 | SPM | No | | | Yes | ⭐⭐▪️▪️
    | | L3V8 | 🔴 | SPM | No | | | Yes | ⭐⭐▪️▪️
    | | R5K7 | 🔴 | SPM | No | | | No | ⭐⭐▪️▪️
    | | 3TR7 | 🔴 | SPM | Yes | | | No | ⭐⭐⭐▪️
    | | 5G9K | 🔴 | SPM | Yes | | | Yes | ⭐⭐⭐▪️
    | | DC61 | 🔴 | SPM | Yes | | | No | ⭐⭐⭐▪️
    | | E3B6 | 🔴 | SPM | Yes | | | Yes | ⭐⭐⭐⭐
    Link to shared analysis code : doi.org/10.5281/zenodo.3518407 | | L7J7 | 🔴 | SPM | Yes | | | No | ⭐⭐⭐▪️
    | | 46CD | 🔴 | SPM, AFNI | No | | | No | ⭐▪️▪️▪️
    | | IZ20 | 🔴 | SPM, AFNI | No | | | No | ⭐▪️▪️▪️
    | | 16IN | 🔴 | matlab; SPM; Microsoft R Open; TExPosition; neuroim | Yes | | | Yes | ⭐⭐▪️▪️
    Multiple software dependencies : matlab + SPM + FSL + R + TExPosition + neuroim. Link to shared analysis code : https://github.com/jennyrieck/NARPS | | 9U7M | 🔴 | nistats | No | | | No | ⭐⭐▪️▪️
    | | 0JO0 | 🔴 | nistats | Yes | | | No | ⭐⭐⭐▪️
    | | SM54 | 🔴 | nistats | Yes | | | No | ⭐⭐⭐▪️
    | | 1K0E | 🔴 | nistats, FSL, HCP Workbench | No, but we did use fmriprep 1.1.8 | | | Yes | ⭐▪️▪️▪️
    |

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